IE2 alignment


                        P1                                             P10     P1'      P2                                                        P2'    P2.1                                      P13                 P2.1'      P3         P4       P5                                                      P5'     P4'    P6                                         P6'         P7         P3'    P8                                              P8'          P7'   P9.0   P9           P9'      P9.1             P13'         P9.1'           P9.2                                                           P9.2'                P9.3                                                  P9.3'                                  P9.0'    P10'         
Cpin.S516           AAGUCUGGUGGACUUCAGUCUC----------------------------GCUGCUGACGCCAGAGAUAGCAGGCUCUCCCCG-----------UGGC-----------------CGGGGCUAUGCUUGCUAGU-GA-CAUCC------------------------CGUGGUGACGG-U------------GGAUGCC-GGCG-AGUAACUUGGAAGGG-GGAAGCUUAGGGG---------------------GGUCCAAA-------------CCCUUA-U-GGUAAU-CCGUGGCGAGUUCUG-------------GAGA-------------CGGGCCGUC-GUA-AC-GGGCGCAAAGGUACCGGUCGCUG----------------UAACG------------------CAGCGGCUCAAGGGACGUGCUAUACC-CACCC----GAAA--GGGUGA-UCCCGC-CUGGAGCA-CCCGUCG-UGCAAAGGGCGUGGAU------GGGAGGGCGGUG--------------CCUG-------------------------------CACCCACCCCC------------GGUGGUUCA------------------------GCGA-----------------UGAACCUCC--------------------------AUCUUUUA--GG-CCAGCAGCCGCGG
                    ...<<<<<<<............----------------------------........>>>>>>>..<<<<<<<<...<<<<<-----------....----------------->>>>>....>>>>>>>><<-<.-<<<<<------------------------...........-.------------>>>>>.>-.>>.-<<<<.<<<...<.<<-<...<<<<<<<<<---------------------........------------->>>>>>-.->>>..>->>.><<<<.<<.<<<-------------....------------->>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------.....------------------>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>.-<<<<<<-<<...<<<-.......->>>...>>>>>.>>>.------<<<.<<..<<<<--------------....------------------------------->>>>..>>>>>------------<<.<<<<<<------------------------....----------------->>>>>>.>>--------------------------......>>--..-............. 
Mal.S516            AAGUCUGUCGAAACCACAGUAUUCUCUU----------------------ACUGCUGACGCCGGAAAUAGCGGGG-------------------UUC-------------------------ACCCUCGCUAGUCGAGCAUCCAU---------------------AUGUAGCGAUGGGU-------------GAUGCC-GGCA-GGUGACCUGGUACGG-GGAAGCCUACG-----------------------GGCCGUGA--------------CG-UA-U-GGUGAU-CCGUGGCGAGCCAACC------------UCCG------------GGUGGCCGUC-GUA-ACCGCGCGCAAAGGCACCGGCCGCCUGUCC------------UCCAA-------------GGAUCAGGUGGCUCAGGUA-CGUGCU-GUC--CAUCU----GAAA---GAUG--CCUGAAGCUGGAGCAACCCAUCG-UGCAAAGGUUUCGGG-------GGUAAGCUGC----------------UCCAUU------------------------------GCAGGUUAUC------------CGGGUCUACUCAACACCCC--------------GUGA--------GGGACAUGAGGGGGCUUGUGGGUGGGGGUGUUGAAGCGCAGAACAAUUUAAC--GG-CCAGCAGCCGC--
                    ...<<<<<<<..................----------------------........>>>>>>>..<<<<<<<<-------------------...-------------------------.>>>.>>>>><<<<.<<<<<...---------------------..............------------->>>>>>->>>.-<<<<.<<<...<<<<-<...<<<<<<<-----------------------........-------------->>->>-.->>>..>->>>><<<<.<<<.<<<------------....------------>>>>>>>>>>-...-[..[[[[[...>>>>>>><<<<<<<<<<<<------------.....------------->>>.>>>>>>>>>......-]]]]]]-<<.--<<<<.----....--->>>>--<<<<<<<<<...<<<........->>>...>>>>>>>>>-------<<<<<.<<<<----------------......------------------------------>>>>.>>>>>------------<<<<<<..<<<<....<<<--------------....-------->>>...>>>>..>>>>>>...<<....<<<<....>>>>...>>......>>--..-...........-- 
Ede.S516            AAGUCUGGUAACUUCGGUUCGAACAAUAAUGAUUUCAAAAUGUUGAAAUGAUUGCUGUCGCCAGAAAUAGGGC---------------------GCCCAUUUAGA---------------------GCCCUAGUGGGAACUGUCACCUCCCUUCUUCGGAGGGGGGGCUAUACCUGGGAGCUAUUUUCAG-ACAGUUUC-UGCGACACGACCUGGUACGGGGAAGCCCGACGGCUACUUCU--------------UCCAC-------------AGAAGUAGGCAGGGUAAUCCCGUGGCGAGGCAUC-------------UCAUG-----------GAUGCCCGUC-GUA-GA-GCACGGUAAGGCGUGGGUUACACG---------------GUAGU-----------------CGUGUAGCUUAAGGGACGUGCCGAAUC-CACCG----GAGA--CGGUGG-CCGUA--24nt--AGCCCUAC-CU----35nt--UACGG-------GCUAGGAGCCAACUUAAUCCUACACCCGUAGGGUUAGACCGGUAAACCACCAGUUCUUGGUGGGCUUCUAGUACUAA-------AAGGUUUC-------------------------48nt-----------------GGGACACUU-----------------------------GAAUU--G--CCAGCAGCCGCGG
                    ...<<<<<<..................................................>>>>>>..<<<<<<---------------------...........--------------------->>>>>><<<<<<<<<<<..<<<<<<<<<....>>>>>>>>>.......................->>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<.....<<<<<<<<--------------.....------------->>>>>>>>...>>>>..>>>>>><<<<.<<<<<<-------------.....----------->>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------.....----------------->>>>>>>>>.......]]]]]].<<<<-<<<<<----....-->>>>>>-<<<<<--~~~~--<<......->>----~~~~-->>>>>-------<<<<<<<<<<....................................................>>>>>>>>>>.....-------<<<<<<<<-------------------------~~~~----------------->>>>>.>>>-----------------------------..>>>--.--............. 
Ddi.S516            AAGUCUGGUGGGAGAAUUAUUUUU---------------------------UUANGGAAACCAAANAAAUUCCANC------------------GGGA-----------------------------UGUGGGUUAGUAGAACCCG-------------------GAUUUGUGAUGGGA-------------CGGGGUC-GGCAAGGUAACUUGU-ACGGGGAGACCC---------------------------GCU-----------------------A--AGUCAAUCCNGUGG-GAGUG------------UUUCUCANGAAN----------CGUCCGCU-GUAAAC-GCGCGCAAAGGUACCGNNUC-------------------UAC-----------------------GGGGUCAAGGGACGGNUCAUAC--AUACGN---GAAAG-CGUAU--NUUACUUCGAAAGCA-CCCAUCA-UGCN-UAGUUGUGAGG------GGCUC--------------------CAUUGN------------------------------------GAGUCGU----------GGUGUU---------------------------AC----------------------GGCACC----------------------------GGAAUA--GG-CCAGCAGCCGC--
                    ...<<<<<<...............---------------------------........>>>>>>....<<.<<..------------------....----------------------------->>.>><<<<<<....<<<<-------------------..............------------->>>>>>>->>>..<<<<.<<<..-<<<<<<..<<<<---------------------------...----------------------->-->>>...>>>>>><<-<.<<<------------............---------->>.>>.>>-....[.-[[[[[...>>>>>>><<<<<-------------------...----------------------->>>>>.......]]]]]].<<.--<<<<<.---.....->>>>>--.<<<<..<.<..<<<-.......->>>.->.>..>>>>..------<<<<<--------------------......------------------------------------>>>>>..----------<<<<<<---------------------------..---------------------->>>>>>----------------------------....>>--..-...........-- 
Tpa.S516-1          AAGUCUGGUGAACCAUCAGUUCCAC-------------------------CAUGCUGACGCCAGAGAUAGUAGGGCCCUCUC------------UCCG---------------GGGAGGGUUAUGCCUGCUAGUCGAGCACUCGC---------------------AAUCGCGAUGG-------------GUGAGUGCC-GGCGAGGUGACCUGGUACGGGGAAGCCUAAGGGUGCGGCC---------------CACAAGGGA----GGCCAGUAACAUCUAU-GGUAAUCCCGUGGCGAGCCUG--------------UUUG-------------CAGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGUCACUA----------------CAGGU------------------UAGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG---CUUCAACUGGAGCA-CCCAUC-GUGUAAAGGUUGAAGG-------AGGCUUACAGC----------------AGGCC-----------------------------GCUGUAAGCCUGGGAGUU-----CUUAUUGUGGCAUGGUGAAGUCCACUCGGCAUUCAUAAUGUCGUCCCCAUGUCAGUCGAUGAG------------------------UGUAUAAAAC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...............-------------------------........>>>>>>>..<<<<<<<<<<<<<<<------------....--------------->>>>>>>>....>>>>>>><<<<.<<<<<<<<---------------------...........------------->>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<.<<<<---------------.........---->>>>.....>>>>>..->>>..>>>>>><<<<.<<<<<--------------....------------->>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------.....------------------>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>---<<<<<<<<...<<<-<.....->>>>...>>>>>>>>.-------<<<<<<<<<<<----------------.....----------------------------->>>>>>>>>>>.......-----<<<<<<<<<<<<<<<.<<........<<<<<<<...>>>>>>>>>.>>>>>>>>..>>>>>>>------------------------........>>--..-............. 
Tpa.S516-2          AAGUCUGGUGAACCAUCAGUUCCAC-------------------------AAUGCUGACGCCAGAGAUAGUAGGGCCCUCUC------------UCCG---------------GGGAGGGUUAUGCCUGCUAGUCGAGCACUCGC---------------------AAUCGCGAUGG-------------GUGAGUGCC-GGGGAGGUGACCUGGUACGGGGAAGCCUAAGGGUGCGGCC---------------CACAAGGGA----GGCCAGUGACAUCUAU-GGUAAUCCCGUGGCGAGCCUG--------------UUUG-------------CAGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGUCACUA----------------CAGGU------------------UAGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCUUCAACUGGAGCA-CCCAUC-GUGUAAAGGUUGAAGG-------AGGCUUACAGC----------------AGGCC-----------------------------GCUGUAAGCCUGGGAGUU-----CUUAUUGUGGCAUGGUGAAGUCCACUCGGCAUUCAUAAUGUCGUCCCCAUGUCAGUCGAUGAG------------------------UGUAUAAAAC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...............-------------------------........>>>>>>>..<<<<<<<<<<<<<<<------------....--------------->>>>>>>>....>>>>>>><<<<.<<<<<<<<---------------------...........------------->>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<.<<<<---------------.........---->>>>.....>>>>>..->>>..>>>>>><<<<.<<<<<--------------....------------->>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------.....------------------>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-<.....->>>>...>>>>>>>>>-------<<<<<<<<<<<----------------.....----------------------------->>>>>>>>>>>.......-----<<<<<<<<<<<<<<<.<<........<<<<<<<...>>>>>>>>>.>>>>>>>>..>>>>>>>------------------------........>>--..-............. 
Par.S516-1          AAGUCUGGUGAACCAUCAGUUC----------------------------UCUGCUGACGCCAGAGAUAGUAGGGUCCCCCCCGG---------AGGA------------CCGGGGGGGAUUACGCCUGCUAGUCGAGCACUCA---------------------GUGUGGCGAUGGG-------------UGAGUGCC-GGCGAGGUGACCUGGUACGGGGAAGCCUAAGGGUUGUCGG-CC------------GCGAGGGG-----GGCCCGUUCGACCUAU-GGUAAUCCCGUGGCGAGCUCCAGCCGGGC------GGAA------GCCCGCUGGGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGCUGCCACC--------------UCCG-----------------GGUGGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCCUCAACUGGAGCA-CCCAUC-GUGUAAAGGUUGAGGG-------GGGCACGCGGCG---------------CGG------------------------------CGCCGUGUGCCCGGG---------AGACCCUCCCCCCGCGG----------------GUUC---------CCGCGGGCGGGGGGGCU----------------------------GUUAAC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<............----------------------------........>>>>>>>..<<<<<<<<<<<<<<<<<<---------....------------>>>>>>>>>>>....>>>>>>><<<<.<<<<<<<---------------------.............------------->>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<..<<-<<------------........----->>>>....>>>>>>..->>>..>>>>>><<<<.<<<<<<<<.<<<<------....------>>>>>>>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<--------------....----------------->>>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-<.....->>>>...>>>>>>>>>-------<<<<<<<<<<<<---------------...------------------------------>>>>>>>>>>>>...---------<<.<<<<<<<<<<<<<<----------------....--------->>>>>>>.>>>>>>>>>----------------------------....>>--..-............. 
Par.S516-2          AAGUCUGGUGAACCAUCAGUUC----------------------------UCUGCUGACGCCAGAGAUAGUAGGGUCCCCCCCGG---------UCCU------------CCGGGGGGGAUUACGCCUGCUAGUCGAGCACUCG---------------------GUGUGGCGAUGGG-------------UGAGUGCC-GGCGAGGUGACCUGGUACGGGGAAGCCUAAGGGUUGUCGG-CC------------GCGAGGGG-----GGCCCGUUCGACCUAU-GGUAAUCCCGUGGCGAGCUCCAGCCGGGC------GGAA------GCCCGCUGGGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGCUGCCACC--------------UCCG-----------------GGUGGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCCUCAACUGGAGCA-CCCAUC-GUGUAAAGGUUGGGGG-------GGGCACGCGGCG---------------UGG------------------------------CGCCGUGUGCCCGGG---------AGACCCUCCCCCCGCGG----------------GUUC---------CCGCGGGUGGGGGGGCU----------------------------GUGAAC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<............----------------------------........>>>>>>>..<<<<<<<<<<<<<<<<<<---------....------------>>>>>>>>>>>....>>>>>>><<<<.<<<<<<<---------------------.............------------->>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<..<<-<<------------........----->>>>....>>>>>>..->>>..>>>>>><<<<.<<<<<<<<.<<<<------....------>>>>>>>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<--------------....----------------->>>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-<.....->>>>...>>>>>>>>>-------<<<<<<<<<<<<---------------...------------------------------>>>>>>>>>>>>...---------<<.<<<<<<<<<<<<<<----------------....--------->>>>>>>.>>>>>>>>>----------------------------....>>--..-............. 
Par.S516-3          AAGUCUGGUGAACCAUCAGUUC----------------------------UCUGCUGACGCCAGAGAUAGUAGGGUCCCCCCCGG---------GCCU------------CCGGGGGGGAUUAUGCCUGCUAGUCGAGCACUCG---------------------GUGUGGCGAUGGG-------------UGAGUGCC-GGCGAGGUGACCUGGUACGGGGAAGCCUAAGGGUUGUCGGGCC------------GCGAGGGG-----GGCCCGUUCGACCUAU-GGUAAUCCCGUGGCGAGCUCCAGCCGGGC------GGAA------GCCCGCUGGGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGCUGCCACC--------------UCCG-----------------GGUGGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCCUCAACUGGAGCA-CCCAUC-GUGUAAAGGUUGAGGG-------GGGCACGCGGCG---------------CGG------------------------------CGCCGUGUGCCCGGG---------GGACCCUCCCCCCGCGG----------------GUUC---------CCGCGGGCGGGGGGGCU----------------------------GUUAAC--GG-CCAGCAG------
                    ...<<<<<<<............----------------------------........>>>>>>>..<<<<<<<<<<<<<<<<<<---------....------------>>>>>>>>>>>....>>>>>>><<<<.<<<<<<<---------------------.............------------->>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<.<<<<<<------------........----->>>>>>..>>>>>>..->>>..>>>>>><<<<.<<<<<<<<.<<<<------....------>>>>>>>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<--------------....----------------->>>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-<.....->>>>...>>>>>>>>>-------<<<<<<<<<<<<---------------...------------------------------>>>>>>>>>>>>...---------<<.<<<<<<<<<<<<<<----------------....--------->>>>>>>.>>>>>>>>>----------------------------....>>--..-.......------ 
Pob.S516            AAGUCUGGUGGAGAAUCAGUUUCCCAAA----------------------CUGCUUGACGCCAGAGAUAGUAGGGCCCUUCCC-----------CGGC--------------GGGAAGGGUUAAGCCUGCUAGUCGAGCACUCA---------------------GCGUGGCGAUGGG-------------UGAGUGCC-GGCGAGGU-ACCUGGUACGGGGAAGCCUAAGGGUUCGGUC---------------GCGAGGGA-----GGCCGGUGUAACCUAU-GGUAAUCCCGUGGCGAGCUCCGGGGGGC-------GUAG------GCCCGCUGGGGCCGUC-GUA-AC-GCGCGGAAAGGCACCGGCCACCACCU-------------CCG-----------------GGGUGGUGGCUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCCCUAACUGGAACA-CCCAUC-GUGCAAAGGUUGGGGGA------GGUUUGGCCGCCC------------GUCC-----------------------------GGGCGGUCAUGCCU------------GGGUGACUCAC----------------------UAAA---------------GUGAUUUUUCU-------------------------------AAC--GG-CCAGCAGCCGC--
                    ...<<<<<<<..................----------------------........>>>>>>>..<<<<<<<<<<<<<<<<-----------....-------------->>>>>>>>>....>>>>>>><<<<.<<<<<<<---------------------.............------------->>>>>>>>->>>..<<<-.<<<...<<<<<<..<<<...<<<<<<<<<<---------------........----->>>>>>....>>>>..->>>..>>>>>><<<<.<<<<<<<.<<<<-------....------>>>>.>>>>>>>>>>>-...-[.-[[[[[...>>>.>>><<<<<<<<<<<-------------...----------------->>>>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<<<<<<....<<-<.....->>>....>>>>>>>>>.------<<<.<<<<<<<<<------------....----------------------------->>>>>>>>>.>>>.------------<<<.<<.<<<<----------------------....--------------->>>>.>>.>>>-------------------------------.>>--..-...........-- 
Clu.S516            AAGUCUGGUGAAAUA-----------------------------------AUGUCUGGCACCAGUUAGUGAGACAUCUCCC-------------CCA----------------------GGGAUUGUCUCGAGUCGC-----------------------------------UAC----------------------GC-GGCAAGGCA-CUUGGUACGGGGAAAGCCC--------------------------UCU-----------------------G---GGUAAUCCCGCGGCGAA------------------UUA-----------------UUCGCC-GUA-AC-GCACGCAAAAGUGUCGACCAC------------------UCU---------------------GUGGAUC-GAGGGACGUGCUAUUUU-UGUUC----UAAC--GAACGAUGUUUGGCCCACCCGGGGACUUCCCCCGGUGGCGCCGGACA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGUAAAUUAGG--GG-CCAGCAGCCGCGG
                    ....<<<<<<.....-----------------------------------........>>>>>>....<<<<<<<..<<<<-------------...---------------------->>>>.>>>>>>>.<<<<<-----------------------------------...---------------------->>->>>..<<<<-<<<....<<<<<...<<<<--------------------------...----------------------->--->>>..>>>>>.<<<<<<------------------...----------------->>>>>>-...-[.-[[[[[...>>>>>>><<<<<<------------------...--------------------->>>>.>>-......]]]]]].<<<<-<<<<<----....-->>>>>><<<<<<<<<<<<<.<<<<....>>>>.>>>>>.>>>>>>>>--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........>>>--..-............. 
Gvi.S516            AAGUCUGGUGGACAUUCAGUUCCAA-------------------------CAUGCUGACGCCAGAGAUAGUGGGCUUCACGAUUCCCC-------CCCU----------GGGGAGGUGAAGUACGCCCGCUAGUCGAGCACUC---------------------GCAGUCGCGAUGGG-------------UGAGUGCC-GGCGAGGUGACCUGGUACGGGGAAGCCUACGGCCUGA------------------UGUC----------------UCAGGCUAU-GGUAAUCCCGUGGCGAGCCCC--------------CUUCC------------GGGGCCGUC-GUA-AC-GCGCGCAAAGGCACCGGUCGUCCGCC-------------CCCG-----------------GGCGACGACUCAAGGGACGUGCU-GUCC-CAUCC----GAAA--GGAUG--CCCGCCACCGGAACA-CCCAUC-GUGUAAAGGUGACGGG-------GGGCGUGGG-------------------GAAG-------------------------------CCCACGCCC------------------------------------------------------------------------------------------------GGGUGAUGAAAAC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...............-------------------------........>>>>>>>..<<<<<<<<<<<<<..<<<<<<-------....---------->>>>>>>>>>>>....>>>>>>><<<<.<<<<<<---------------------..............-------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<<------------------....---------------->>>>>>>..->>>..>>>>>><<<<.<<<<<--------------.....------------>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<.<<<-------------....----------------->>>>>>>>>>.......]]]]]]-<<..-<<<<<----....-->>>>>--<<<<.<<<<...<<<-<.....->>>>...>>>>.>>>>-------<<<<<<<<<-------------------....------------------------------->>>>>>>>>------------------------------------------------------------------------------------------------...........>>--..-............. 
Sda.S516            AAGUCUGGUGAACUCUACAGAAUUCCUUUAC-----------------CGGCUUCUGACGCCAGAGAUAGUAGGCAGUUGGG-------------GCAA---------------CCCGCUGUAUCCCUACUAGUCGAGGUCAC--------------------GCAAUCAGUUUUGGG-------------UGUGAUCC-GGCGAGGUAACCUGGUACGGGGGAACCUAAGGUCUGG------------------GCAA----------------CCAGGCUAU-GGUAAUCCCGUGGCGAGCCGAGGAGCA--------GUGA---UGCGACUCAUUAGGCCGUC-GUA-AC-GCGCGCUAAGGUACCGGUCAGCUUUGG------------UUAC---------------UCAAAGUUGGCUCAAGGGACGUGCUAAUCC-CACCG----GAAA--CGGUG--UUCUGUGCUGGAGCC-CCCAAAAGGC-AAAGGUGCAGGA-------GGACGAUGCUUCAACG--------AGGAAAUG---------------------CGAUGAAGAUGUCAAGUCC-GGUAA------UUCUCG---------------------------AUAUCAGA----------------UGAGAA----------------------------AACAGU--GG-CCAGCAGCCG---
                    ...<<<<<<<.....................-----------------..........>>>>>>>..<<<<<<<<<<<.<<<-------------....--------------->>>>>>>....>>>>>>><<<<.<<<<<<--------------------...............-------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<<------------------....---------------->>>>>>>..->>>..>>>>>><<<<.<<<<<<..<<<--------....--->>>..>>>....>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<<------------....--------------->>>>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-.......>>>-...>>>>>>>>>-------<<<<<<<<<<<<<.<<--------........--------------------->>.>>>>>.>>>>..>>>>-.....------<<<<<<---------------------------........---------------->>>>>>----------------------------....>>--..-..........--- 
Ufl.S516            AAGUCUGGUAACGUUCAGUUUCUUUAU-----------------------UUUGCUGACGCCAGAGAUAGUAGGGUUGAG---------------AUU-----------------CUCAAUUAUGCCUACUAGUCGAUGUAUUCA------------------UCAAAUAGUGAUGGG-------------UGAAUACC-GGCAAGGUAACCUGGAACGGGGAAACCUAAGGUACUU------------------AAC-----------------GAGUACUAU-GGCAAUCCCGUGGCGAGCUUCAAUUUA--------GUAA----UAGAUUGUCAUAGCCGUC-GUA-AC-GCGCGGAAAGGUACCGGUCAACCUACCUCC---------CCAGUC------------GGAGGGGUUGGCUCGAGGGACGUGCUAAACC-CAUUC----GAAA--GAAUG--UUAUUAACUGGAACA-CCCAUCAUGU-AAAGGUUAAUAA-------GAGCUAUAAUAGUUUUA--------GGAAA--------------------------UGAUUACUAUUCGCUC-GGUAUUUU---UAAAUUCAUAAAGCAAAUU--------------GGA----------AAUUUGUAAAGAAUUUA----------------------------UAGAUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<..................-----------------------.........>>>>>>..<<<<<<<<<<<<<---------------...----------------->>>>>>....>>>>>>><<<<..<<<<<<<------------------...............------------->>>>>>>>->>>..<<<<.<<<...<<<<<<...<<...<<<<<<<------------------...----------------->>>>>>>..->>...>>>>>><<<<.<<<.<<<<<<<--------....---->>>>>>>....>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<..<<<<<---------......------------>>>>>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<<<<...<<<-.......>>>-...>>>>>>>>>-------<<<<...<<<<<<.<<<--------.....-------------------------->>>..>>>>>>.>>>>-........---<<<<<<<.....<<<<<<<--------------...---------->>>>>>>...>>>>>>>----------------------------....>>--..-............. 
Ti_fl.S516-1        AAGUCUGGUAACAUCAGU--------------------------------GCUACUGACGCCAGUAAGAGCAGG---------------------CAACGUAUCA--------------------CCUGCUAGUCGAUGCGAGU----------------------UUCCUUCUUGGG-------------UGCUCGCC-GGCGAGGUAACCUUGUACGGGGGACUCUACAGCAUCGG-----------------UAUC-------------------GAUGAC-GAGAAUCCCGUGGCG--------------AGCCGCGCAAG-----------------CGUUCGUA-AC-GCGCGCAAAGGUACCGGUUCUAUU---------------UCAU------------------GAUAGAGCUCAAGGGACGUGCUAUUCC-CGCUC----GAAA--GAGU----CUGCCGCUGGAGCC-CCCAGA-GGC-UAAGGUGACGGA-------GAGCGA-GCCGCAGA---------AGGAAAUG----------------------CCUUGCGAUGUCAAGCUC-GGUA----------------------------------------------------------------------------------------------GAUUCAUUAA--GG-CCAGCAGCCGCGG
                    ....<<<<<.........--------------------------------.........>>>>>....<<<<<<---------------------..........-------------------->>>>>>.<<<<..<<<<<<----------------------............-------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<......<<<<<-----------------....------------------->>>>>.->>>..>>>>>><<<<--------------...........----------------->>>>....-[.-[[[[[...>>>>>>><<<<<<<<<---------------....------------------>>>>>>>>>.......]]]]]].<<..-.<<<<----....-->>>>----<<<.<<<<..<<<<-......->>>->..>>>>.>>>.-------<<<<<<-<<<<<<<.---------........----------------------.>>.>>>>>.>>..>>>>-....----------------------------------------------------------------------------------------------........>>--..-............. 
Ti_fl.S516-2        AAGUCUGGUAACAUCAGU--------------------------------GCUACUGACGCCAGUAAGAGCAGG-------------------CAUAA-GUAUCA--------------------CCUGCUAGUCGAUGCGAGU-------------------UUCCACCUUCUUGGG-------------UGCUCGCC-GGCGAGGUAACCUUGUACGGGGGACUCUACAGCAUCGG-----------------UAUC-------------------GAUGAC-GAGAAUCCCGUGGCG--------------AGCCGCGCAAG-----------------CGUUCGUA-AC-GCGCGCAAAGGUACCGGUUCUAUU---------------UCAU------------------GAUAGAGCUCAAGGGACGUGCUAUUCC-CGCUC----GAAA--GAGCG--UCUGCCGCUGGAGCC-CCCAAGAGGC-UAAGGUGACGGA-------GAGCGAAGCCGCAGG---------AGGAAAUG----------------------CCUGCGGAUGUCAAGCUC-GGUA----------------------------------------------------------------------------------------------GAUUCAU-AA--G--CCAGCAGCCGCGG
                    ....<<<<<.........--------------------------------.........>>>>>....<<<<<<-------------------.....-......-------------------->>>>>>.<<<<..<<<<<<-------------------...............-------------.>>>>>>>->>>..<<<<.<<<...<<<<<<...<<<.....<<<<<-----------------....------------------->>>>>.->>>..>>>>>><<<<--------------...........----------------->>>>....-[.-[[[[[...>>>>>>><<<<<<<<<---------------....------------------>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<.<<<<..<<<<-.......>>>->..>>>>.>>>>-------<<<<<<..<<<<<<<---------........---------------------->>>>>>>...>>..>>>>-....----------------------------------------------------------------------------------------------.......->>--.--............. 
Pbr.S516            AAGUCUGGUGACGAUUCGACAGUGUCUGUUU-------------------GCUGUUGGCGCCAGAGAUAGUACGGCUUCU-------------CUUUUAA---------------AGAAGUUAUGCGUGCUAGUCGAGCAGCCC---------------------AAUCUAGUUGUGGG-----------CUGGCUGCC-GGCGAGGUAACCUGGUACGAGGAAGGCUUAACGGAUU------------------UUUGAU---------------AAUCCUAU-GCUAAUCUCGUGGCGAGCCUGUGCCGAA-------GCGA---UUCGGGCAUAGAGGCCGUC-GUA-AC-GCGCGGAAAGGUACCGGGCGGGCU---------------UCCAC------------------AGUCCGCUCAAGGAACGUGCUAAUCC-CAUUC----GAAAGAAAAUGCCUGAUCGACUGGUAGCGCCCACAACGCAAAGGACGAUCGUGCAGUGUGUGGCGCGUGUGAUGG--------AGGAA-UG------------------------CCAUCAGACGAGACCC-GGUAUAU--------------------------------------------------------------------------------------------------GUU--G--CCAGCAGCCGCGG
                    ...<<<<<<<.....................-------------------........>>>>>>>..<<<<<<<<<<<<<-------------.......--------------->>>>>>....>>>>>>><<<<.<<<<<<.---------------------..............-----------..>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<.....<<<<<------------------......--------------->>>>>...->>>..>>>>>><<<<.<<<<<<<<<<<<-------....--->>>.>>>>>..>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------.....------------------>>>>>>>>>......]]]]]]<<<..-<<<<<----....>>..>>><.<<<<<<.<<....<<<.......>>>...>>.>>>>>>.>......<.<<<.<<<.<<<<<<--------.....-..------------------------>>>>>>.>>>.>.>>>-.......-------------------------------------------------------------------------------------------------->>>--.--............. 
Cmu-2.S516-1         AAGUCUGGUGGACAUUCAACCCAU--------------------------GCUGUUGACGCCAGAAAUAGUAGGGCAGUUGC------------CAUUUC-------------GCAAUUGUUAUGCCUGCUAGUCGAGCAAUCA--------------------UUCAAUUGAACGGGC------------UGAUUGCC-GGCAAGACGACCUGGUACGGGGAAGCCU---------------------------UCACAACUAU------------------GGGCUAAUCCCGUGGCGAACUU-CAAAGG--------GUGA-----CUUUUGUU-AAGCCGCC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCAGCCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<<<<<<------------......------------->>>>>>>>....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<.<<<<<---------------------------..........------------------>>>>>..>>>>>><<<<..<<<-<<<<<<--------....----->>>>>>..->>>.>>>>-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........... 
Cmu-2.S516-2        AAGUCUGGUGGACAUUCAACCCAU--------------------------GCUGUUGACGCCAGAGAUAAGUAGGGCAGUUGCU----------UUUUUU------------GGCAAUUGUUAUGCCUGCUAGUCGAGCAAUCA--------------------UUCAAUUGAACGGGC------------UGAUUGCC-GGCAAGACAACCUGGUACGGGGAAGGCCUUCA-----------------------CAACUA--------------------UGGGGCUAAUCCCGUGGCGAGCUUGCAAAGG--------GUGA-----CUUUUGUA-AAGCCGUC-GUA-AC-GCACGCUAAGGUGUCGGCUGACUC---------------AGUCA-----------------GAGUUGGCUUAAGGGACGUGCUAACCC-CACCC-GAUGAUAAAGGGUG--UCCAAUGCAAUA-GCACCCGUUCUGC-AAAGGCAUUGGA-------GGGCUACAGUGUAAGG--------AGGAAAUG---------------------------CCGUACACUGCCC-GGUACAAAUCAACUGGGAUUC-----------------------CAUGUC---------------GAACCCAGU----------------------------GAAAGU--GG-CCAGCAGCCGC--
                    ...<<<<<<<..............--------------------------........>>>>>>>....<<<<<<<<<<<<<<<----------......------------>>>>>>>>>....>>>>>>.<<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<.<<-----------------------......-------------------->>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------.....----------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<<<<.<<--------........--------------------------->>.>>>>>>>>>>-...........<<<<<<.<<<-----------------------......--------------->>>>>>>>>----------------------------....>>--..-...........-- 
Cps.S516            AAGUCUGGUGAACCAUCAACAAU---------------------------GCUGUUGACGCCAGAGAUAGUAGGGGCAGUG--------------UUC-----------------CACUGUUAUGCCUGCUAGUCGAGCAAUCA---------------UUGUAUACCUUUGAACGGGU------------UGAUUGCC-GGCAAGACGACCUGGUACGGGGAAGGCCU--------------------------UCAUUCAUAC------------------AGGCUAAUCCCGUGGCGAGCUUGCAUAGG--------GUGA-----CUUAUGCA-AAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCUGACUCU--------------AUUGA----------------AGAGUUGGCUUAAGGGACGUGCUAACCC-CACCC-GAUGAGAAAGGGUG--UCCAAUGCAAU--GUACCCGUUCUGC-AAAGCAUUGGA--------GACAAGAGUUGUUG----------AGGAAAUG-----------------------------CUCACACUGUC-CGUA---------------------------------------------------------------------------------------------------AAAGU--G--CCAGCAGCCGC--
                    ...<<<<<<<.............---------------------------........>>>>>>>..<<<<<<<<<<<<<<--------------...----------------->>>>>>>...>>>>>>><<<<.<<<<<<<---------------....................------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------..........------------------>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<--------------.....---------------->>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<..<--<<<.......>>>->..>>>>>>>>--------<<<<...<<.<<.<----------........----------------------------->..>>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--.--...........-- 
Cre.S516            AAGUCUGGUGAAC-AU----------------------------------GCUGUUGACGCCAGAGAUAGUGGGACAAUUGCAGG---------UACA------------CUUGCAGUUGGUAGGCCCGCUAGUCGAGCAGUCA--------------------AUCUAUGAGAUGGGUC------------GACUGCC-GGCAAGACAACCUGGUACGGGGAAAGCUAAGUCA---------------------UGCA-------------------UGAUAU-GCUAAUCCCGUGGUGAGUUGGUCUAGA--------GUAA-----UCUUGACU-AAACCAUC-GUA-AC-GCACGCCAAGGUGUCGGCUGAGUUCUG------------AUGAU--------------CAGGAGUUGGCUUAAGGUACGUGCUAACCC-CAUCU----AAAA--AGAUG--CUCAGAGUAUUA-AUGCCCAUCUCAU-GAAGACUCUGAG-------AGGCAAAAGUGUGUCG--------AGGAAAUG---------------------------CUUCACACUGCCU-GGUA---------------------------------------------------------------------------------------------------CAAGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...-..----------------------------------........>>>>>>>..<<<<<<<.<<<<<<<<<<---------....------------>>>>>>>>>>.....>>>>>>><<<<.<<<<<<.--------------------................------------>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<---------------------....------------------->>>>..->>>..>>>>>><<<<.<<<<<<<.<<<--------....----->>>.>>>>-.>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<<<------------.....-------------->>>>>.>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<<...<<<<<..<--------........--------------------------->..>>>>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Ppl.S516            AAGUCUGGUGAACAUUCAACAU----------------------------GCUGUUGACGCCAGAGAUAGUAGGGCAGCUGC------------UCCUC--------------GCAGCUGUUAUGCCUGCUAGUCGAGCAACCAA------------------GGUUCAUGGAAUGGG------------UUGGUUGCC-GGCAAGACGACCUGGUACGGGGAAGGCUAAGUUGCA-------------------GCAA-----------------UGCAAUAU-GCUAAUCCCGUGGUGAGCCUGCAUAGG--------GCGA-----CCUUUGCA-AGGCCAUC-GUA-AC-GCACGGUAAGGCGUCGGCUGACUC---------------UCU-------------------GAGUCGGCUUAAGGGACGUGCUAACCC-CAUCC----GAAA--GGAUG--CCUGAUGGAAUA-GUACCCAUUCUAC-GAAGCCAUCGGG-------AGGCAAUGGUGUUGGG--------AGGAAAUG--------------------------CCCAAUCACCGCCU-GGUA---------------------------------------------------------------------------------------------------UCAGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<............----------------------------........>>>>>>>..<<<<<<<<<<<<<<<------------.....-------------->>>>>>>>....>>>>>>><<<<.<<<<<<<<------------------...............------------>>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<-------------------....----------------->>>>>>..->>>..>>>>>><<<<.<<<<<<<.<<<--------....----->>>.>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<<<<<<<--------........-------------------------->>>>>.>>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Sc_sp.S516          AAGUCUGGUGGACAUUCAACCCAU--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCAUUUGC------------UAUGUUU------------GCAAUUGUUAUGCCUGCUAGUCGAGCAAUCA--------------------UUCAAUUGAACGGGC------------UGAUUGCC-GGCAAGACGACCUGGUACGGGGAAGGCCCU-------------------------CACAACUA-------------------AGGGCUAAUCCCGUGGCGAGCUUGCAAAAG--------GUGA-----CUUUUGUA-AAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCUGACUC---------------AAUAA-----------------GAGUUGGCUUAAGGGACGUGCUAACCC-CACCC-GAUGAUAAAGGGUG--UCCAAUGCAAUA-GCACCCGUUCUGC-AAAGGCAUUGGA-------GGGCUAUAGUGUAAGG--------AGGAAAUG---------------------------CCAUACACUGCCC-GGUACAAUCCAGCGGGGAUACC-----------------------AUGA---------------GGUAUAAGGU----------------------------GAAASU--GR-YCARCASMCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<.<<<<------------.......------------>>>>.>>>....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<<-------------------------........------------------->>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------.....----------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<<<<.<<--------........--------------------------->>.>>>>>>>>>>-...........<<....<<<<<-----------------------....--------------->>>>>...>>----------------------------....>>--..-............. 
Soo.S568            UUGUUGCAG-GACAUUCAACCCAU--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCAGUUGC------------UUUUUGU------------GCAAUUGUUAUGCCUGCUAGUCGAGCAAUCA--------------------UUCAAUUGAACGGGC------------UGAUUGCC-GGCAAGACAACCUGGUACGGGGAAGGCCU--------------------------UCACUACUAU------------------GGGCUAAUCCCGUGACGAGCUUGCAAAGG--------GUGA-----CUUUUGU--AAGCCGUU-GUU-AC-GCACGGUAAGGUGUCGGCU----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACUCCAUU--G--UUAAAAAGCUCGU
                    ...<<<<<<-..............--------------------------.........>>>>>>..<<<<<<<<<<<<<<<------------.......------------>>>>>>>>....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------..........------------------>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>-->>>>>>>>-...-[.-[[[[[...>>>>>>>....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........--.--............. 
Aha.S516            AAGUCUGGUAAA--------------------------------------AUUGCUGUUGCCAGAGAUAGUAGGGGCACGAC------------CCCCCG-------------GUCGGUGUUAUGCCUGCUAGUCGAGCAGCCA-------------------CACGAAU-GAAUGGGC------------UGGCUGCC-GGCAAGACGACCUGGUACGGGGAAAGCCUUCAGCCCCCC----------------UUG------------------GGGGGGCCGGCCAAUCCCGUGGCGAGCUCCUGAAGA--------GCGA-----UCUUCUAC-GAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCUGACUC---------------UCC-------------------GAGUCGGCUUAAGGGACGUGCUAAUCC-CACAC-GAUGAUAAAGUGUG--CUUUGAAGAAUA-GCUCCCAUUCAGC-GAAGCUUCAAAG-------GGGCGCUAGUGUGUUG--------AGGAAAUG---------------------------CUUCACACUGCCC-GGUA---------------------------------------------------------------------------------------------------UCAAU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<..--------------------------------------........>>>>>>>..<<<<<<<<<<<<<<<------------......------------->>>.>>>>>...>>>>>>><<<<.<<<<<<<-------------------.......-........------------>>>>>>>>->>>..<<<<.<<<...<<<<<<...<<<....<<<<<<<----------------...------------------>>>>>>>.>>>...>>>>>><<<<.<<<<..<<<<<--------....----->>>>>...->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<<<<..<--------........--------------------------->..>>>>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Rpo.S516-1          AAGUCUGGUGAACAUUCGACACAUC-------------------------GCUGUUGACGCCAGAGAUAGUGGGGCGGGCCGC-----------AAC---------------GCGACCUGUUAUGCCUGCUAGUCGAGCAACCA------------------CACACAGUUGAAUGGGG------------AGGUUGCC-GGCGAGAUGACCUGGAACGGGGAAGGCUAAUCUGCU-------------------GUAACA---------------GGCAGGAU-GCUAAUCCCGUGGCGAGCUGGCAAAGG--------GCGA-----CCUUUGCA-CAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGGCGACUC---------------UCU-------------------GAGUCGGCUUAAGGGACGUGCUAAUCC-CAUCC----GAAA--GGAUG--CUCAAAGCAAUA-GCACCCAUUCUGC-AAAGGCUUUGAG-------GGGCGACAAGACUGGG--------AGGAAAUC--------------------------CCCAGUACUUGCCC-GGUA---------------------------------------------------------------------------------------------------CAAGU--GG-CCAGCAGCCG---
                    ...<<<<<<<...............-------------------------........>>>>>>>..<<<<<<<<<<<<.<<<-----------...--------------->>>.>>>>>....>>>>>>><<<<.<<<<<<.------------------.................------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<...<<<<<<-------------------......--------------->>>>>>..->>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<<<....<<<<<<--------........-------------------------->>>>>>..>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-..........--- 
Rpo.S516-2          -AGUCUGGUGAAC-------------------------------------GCUN-UGACGCCAGAGAUAGUCGGGCAAGCUGCUA---------UCAA-------------UAGGAGCUUGUACGCCUGCUAGUCGAGCAACCA-----------------UGUAGUCGUGGAAUGGGU------------CGGUUGCC-GGCGAGAUGACCUGGAACGGGGAAGGCCUUCAAUUGCGC----------------GCGA-----------------GUGCAAUCGGCUAAUCCCGUGGCGAGCUAGCAUAGG--------GCGA-----CCUUUGCA-UAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCCGGCUC---------------UCG-------------------GAGUCGNCCUAAGGGACGUGCUAACCC-CCAUCCGAUGAUAAAGGAUG-CUCAAAAGCAAUA-SCNCCCCAUNCUNNRARGSYUUKRRG-------GGSSRNMRGGKYSGGR---------RGAAAUG--------------------------CCCGANAC-UGCCC-GGUAUG-----ACAGUUGUGUUGA--------------------GCGC--------------UCUGCACACUGU----------------------------GCUCGU--GG-CCAGCAGCCGCGG
                    -..<<<<<<<...-------------------------------------....-...>>>>>>>..<<<.<<<<<<<<<<.<<<---------....------------->>>.>>>>>>....>>>>>>><<<<.<<<<<<.-----------------..................------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<....<<<<<<<----------------....----------------->>>>>>>.>>>>..>>>>>><<<<.<<<<<<<.<<<--------....----->>>.>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]].<<..-.<<<<<.........>>>>>-<<<<<<<<<....-.................>>>>>>>>>-------<<<<<.....<<<<<<---------.......-------------------------->>>>>>..->>>>>-......-----<<<<<.<<<<.<<--------------------....-------------->>.>>>>>>>>>----------------------------....>>--..-............. 
Msp.S516            AAGUCUGGUGAACGUAUUAAUAGUUUUUCAAU------------------GCUGUUGANGCCAGAGAUAGUGGGGCGAUGCCUGC---------GAUU-------------GCGGCAUUGUUAGGCCCGCUAGUCGAGCAAUCA-------------------AUUAAAUUGAAUGGGC------------GGAUUGCC-GGCAAGAUGACCUGGAACGGGGAAGGCCUUCAAUCGAAUCU--------------CUUG---------------AGAUUUGACUGGCUAAUCCCGUGGCGAGCUCGCAUAGG--------GUGA-----CCUUUGCAGUAGCCGUC-GUA-AC-GCACGGAAAGGCAUCGGCUGUACUCU-------------UUC------------------AGAGUCGGCUUAAGGGACGUGCUAACCC-CAUCC-GAUGAUAAAGGAUG--CUCGAAAUACUA-GCACCCAUUCUGC-AAAGGUUUCGAG-------GGGCCAAGGCGACAG---------AGGAAAUG--------------------CUGUUCGCCAUAUAUAGCCC-GGUAUG-----UGUUUUUGAUGGGACUUUGGGAUUACAA----ACCUGAUUGUGAAUCCCCUCAUACGAUAACA-------------------------------AGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<......................------------------........>>>>>>>..<<<<<<<<<<<<<<<.<<---------....------------->>>>>>>>>>....>>>>>>><<<<.<<<<<<.-------------------................------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<.....<<<<<<<<--------------....--------------->>>>>>>>..>>>>..>>>>>><<<<.<<<.<<<.<<<--------....----->>>.>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<.<<<<<-------------...------------------>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<<<<<<---------........-------------------->>>.>>>>>.......>>>>-......-----<<<<.<<<<<<<<.....<<<<<<<<<<----......>>>>>.>>>>>>>>>>.>>>.>>>>-------------------------------.>>--..-............. 
Pau.S516-1          AAGUCUGGUG-ACAUUCAACAAAA--------------------------GCUGUUGACGCCAGAGAUAGUGGGGCAACCC-------------GUGU----------------GGGUUGGUAUGCCUGCUAGUCGAGCAAUCG--------------------AACCAGUAGACGGGG------------UGAUUGCC-GGCAAGACGACCUGGUACGGGGGAGGCCU--------------------------UCAAUUCAUAC-----------------AGGCUAAUCCCGUGGCGAGCUUGUGAAGA--------GCAA-----UCUUCAUG-AAGCCGUC-GUA-AC-GCACGGAAAGGCGUCGGCUGACUC---------------UCC-------------------GAGUCGGCUUAAGGGACGUGCUAACCC-CAUCC-GAUGACAAAGGAUG--UCCAAAGCAAUA-GCACCCGUCUUGC-GAAGGCCUUGGA-------GGGCGAUAGUGAUGGG--------AGGAAAUG---------------------------CUCAUCACUGCCC-GGUAU-------------------------------------------------------------------------------------------------CAUAGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<-.............--------------------------........>>>>>>>..<<<<<<<.<<<<<<-------------....---------------->>>>>>.....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------...........----------------->>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<.<<....-<<<.......>>>-....>>.>>>>>-------<<<<<...<<<<<<<<--------........--------------------------->>>>>>>>>>>>>-.....-------------------------------------------------------------------------------------------------....>>--..-............. 
Pau.S516-2          AAGUCUGGUGGACAUUCAACAAAA--------------------------GCUGUUGACGCCAGAGAUAGUGGGGCAACCC-------------GUGU----------------GGGUUGGUAUGCCUGCUAGUCGAGCAAUCG--------------------AACCAGUAGACGGGG------------UGAUUGCC-GGCAAGACGACCUGGUACGGGGGAAGCCU--------------------------UCAAUUCAUAC-----------------AGGCUAAUCCCGUGGCGAGCUUGUGAAGA--------GCAA-----UCUUCAUG-AAGCCGUC-GUA-AC-GCACGGAAAGGCGUCGGCUGACUC---------------UCC-------------------GAGUCGGCUUAAGGGACNUGCUAACCC-CAUCC-GAUGACAAAGGAUG--UCCAAAGCAAUA-GCACCCGUCUUGCGAAAGGCCUUGGAA------GGGCAAUAGUGAUGGG-------AAGGAAAUG---------------------------CUCAUCCCUGCCCCGGUAU-------------------------------------------------------------------------------------------------CAUAAUU-GGCCCACCANCCGCCG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<.<<<<<<-------------....---------------->>>>>>.....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------...........----------------->>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]]<<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>.....>>>>>>>>.------<<<<<...<<<<<<<<-------.........--------------------------->>>>>>>>>>>>>......-------------------------------------------------------------------------------------------------....>>>-................ 
Kap.S516            AAGUCUGGUGAACCAAGCGAGGUAGCAAAAAUU-----------------GCUGCUGACGCCAGAGAUAGUAGGACAAGCU-------------UUUU----------------GGCUUGUUAUGCCUGCUAGUCGAGCAGUCG--------------------AAUAAAUGAAUGGGC------------UGACUGCC-GGCAAGAUGACCUGGUACGGGGAAGGCCUUCAAAAAUGCU---------------GUCA------------------AGCAUUCGGCUAAUCCCGUGGCGAGCUUGUAGAGA--------GCAA-----UUUCUGCA-AAGCCGUC-GUA-AC-GCACGCAAAGGCAUCGGCUAUCU----------------UUUGUU-----------------AGAUGGCUUAAGGGACGUGCUAACCC-CAUGC-GAUGAAAAAGCAUG--CUCAAAGCAAUA-GCACCCAUUCUGC-AAAGGCUUUGAG-------GGGCAAAAGUGUUGG--------UAGGAAAUGC---------------------------CCAACACUGCCC-GGUAU---------------------------------------------------------------------------------------------------UCGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<.......................-----------------........>>>>>>>..<<<<<<<<<<<<<<-------------....---------------->>>>>>>....>>>>>>><<<<.<<<<<<<--------------------...............------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<......<<<<<<---------------....------------------>>>>>>.>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------......----------------->>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<<...<<<<<<<--------..........--------------------------->>>>>>>>>>>>-.....---------------------------------------------------------------------------------------------------..>>--..-............. 
Afu.S516            AAGUCUGGUGAACAAAC---------------------------------GCUGUUGACGCCAGAGAUAGUGGGGCGAGCUAU-----------GAAA--------------GUAGCUUGUUAUGCCUGCUAGUCGAGCAACCA-------------------CAUUUACAGAAUGGGC------------UGGUUGCC-GGCAAGAUGACCUGGAACGGGGAAGGCCCUCACCUGCC-----------------GAAU-----------------GGCAGGCAGGCUAAUCCCGUGGCGAGCUAGCAAAGG--------GAGA-----CCUCUGCA-UAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCCGACU----------------UUAG-------------------AGUUGGCUUAAGGGACGUGCUAACCC-CAUCC-GAUGAUAAAGGAUG--CUCAGAGCAAUA-GCACCCAUUCUGC-AAAGGCUCUGAG-------GGGCGACAGUACUUGG--------AGGAAAUG----------------------------CCCCGUACGCCC-GGUA-------UCGAGCG--------------------------AUUCAAAG----------------CGCAGA-------------------------------AGU--GG-CCAGCAGCCGC--
                    ...<<<<<<<.......---------------------------------........>>>>>>>..<<<<<<<<<<<<<<<<-----------....-------------->>>>>>>>>....>>>>>>><<<<.<<<<<<<-------------------................------------>>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<....<<<<<<-----------------....----------------->>>>>>..>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------....------------------->>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<....<<<<..<<--------........---------------------------->>..>>>>>>>>-....-------<<..<<<--------------------------........---------------->>>.>>-------------------------------.>>--..-...........-- 
Qcl.S516            AAGUCUGGUGAACACAUUC-------------------------------GCUGUUGACGCCAGAGAUAGUGGGGCGGCCCGUC----------CUCG-------------GACGGACUGUUACGCCUGCUAGUCGAGCAACCA-------------------ACGCGACGGAAUGGGU------------CGGUUGCC-GGCAAGAUGACCUGGAACGGGGAAGGCCUUCGGAUGCUGCG--------------AGU---------------CGUAGCAUUUCGGCUGAUCCCGUGGCGAGCUAGCAAAGG--------GCGA-----CUUUUGCG-UAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGUCGACU----------------CCGUGGA----------------AGUCGGCUUGAGGGACGUGCUAACCC-CAUCC-GAUGAUAAAGGAUG--CUCGAAGCAAUA-GCACCCAUUCUGC-GAAGGCUUCGGG-------GGGCGACAGGACUAGG--------AGGAAAUG---------------------------CCUAGCCCUGCCC-GGUU---------------------------------------------------------------------------------------------------CAAGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<.........-------------------------------........>>>>>>>..<<<<<<<<<<<<<<<<<----------....------------->>>>>>>>>>....>>>>>>><<<<.<<<<<<.-------------------................------------.>>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<...<<<<<<<<<<--------------...--------------->>>>>>>>>>.>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<----------------.......---------------->>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<...<<<.<<<<<--------........--------------------------->>>>>.>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Chlo_sp-10.S516     AAGUCUGGUAAAA--------------------------------------UUGCUGUUGCCAGAAAUAGCG----------------------GGUUUC---------------------------CGCUAGUCGAGUAGCCA----------------------ACUUUGAUUGGGU-------------GGUUACC-GGCGAGACGACCUGGAACGGGGGAAGCCUUCAUAUUUUGUCUC------------UUCG-------------------GGGCACGGCUAAUCCCGUGGCGAGCUGUAGAAGA--------GCGA-----UCUUUGAA-CAGCCGUC-GUA-AC-GCACGGAAAGGCGUCGGUCGACUCUU-------------UUC-----------------AAGAGUCGGUUUAAGGGACGUGCUAGACC-CAUUC-GAUGAUAAAGAAUG--CCUAGAGCCUGA-GUGCCCAAUCCAC-GAGGGUUCUAGG-------GAGCUUCAAUGUGUCG--------AGGAAAUG-----------------------CUUCACAUUACACGCUC-GGUA--------------------------------------------------------------------------------------------------GUUAUC--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...--------------------------------------.......>>>>>>>..<<<<<----------------------......--------------------------->>>>><<<<.<<<<<<<----------------------............>------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<..........<<<<<------------....------------------->>>.>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------...----------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<<<..-<<<.......>>>-..>>>>>>>>>>-------<<<<...<<<<<<..<--------........----------------------->..>>>>>>....>>>>-....--------------------------------------------------------------------------------------------------....>>--..-............. 
Chlo_sp-11.S651     ACUUUGAGUU-----------------------------------------UUCAAUUAGCUCAUAAGAGUUGGGAGGCUU-------------GAAG---------------------AGGCCCCCAACUAGUCCACUGGCGUAU--------------------------AUUG-GU-------GCGAGUGCCAGUUGGGCGAGAUGACCUGGAACGAGGAAAGCCGAGGGAGACG-----------------CUC-----------------UGCUCCUGGGGCUAAUCUCGUGGCGAGCUUCA-------------AUAU------------UGAAGCCGUC-GUA-AC-GCGCGGAAAGGCAUCGGUCAAG-----------------CUUGUUGU----------------CUUGGCUUAAGGAACGUGCUAGACC-CUGGG----GCUAA-CCCAG--CCUGCUGUUGGA-GUGCUCGCACCAC-AAAGACAGUUGG-------AGGCGCCGGAGACUCGGG------AGGAAAUG--------------------------CCCUUGUCGAGCCU-GGUA---------------------------------------------------------------------------------------------------GAAUC--G--AAAUUAGAGUGUU
                    ....<<<<<<-----------------------------------------.......>>>>>>....<<<<<<<.<<<<<-------------....--------------------->>>>>>>>>>>>.<<<<<<<<<<<<<<--------------------------....->>------->>....>>>>>.>>>>>..<<<<.<<<...<<<<<<..<<<<..<<<<<.<<-----------------...----------------->>>>>>>..>>>>..>>>>>><<<<.<<<<<<-------------....------------>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<-----------------........---------------->>>>>>>.......]]]]]].<<..-<<<<<----.....->>>>>--<<.<<<<<<<..-<<<....>>>..>->...>>>>>.>>-------<<<<......<<<..<<<------........-------------------------->>>..>>>..>>>>-....---------------------------------------------------------------------------------------------------...>>--.--............. 
Chlo_lu.S516-1      AAGUCUGGUGAAC-UUCGACAGUUCCUUUU--------------------GCUGUUGACGCCAGAGGUAGUC----------------------GAUAGA---------------------------GACUAGUCGAUGCAGCC-----------------UGUUUAUGAUGAUCGGGU-------------GGCUGCC-GGCAAGACGACCUGGAACGGGGAAGGCCUACGAUGGGCA----------------GCGA------------------UGUCCAUGGCUGAUCCCGUGGCGAGCUGGCGGAGA--------GCGA-----UCUCCGUCG-AGCCGUC-GUA-AC-GCACGCUAAGGCGUCGGUGGACUCUC-------------GAUA----------------GAGAGUCCGCUUAAGGGACGUGCUAAUCC-CAGCC-GAUGAGAAAGGCUG--CUCGCUCGACUA-GGCCCUGAUCGCC-GAAGCGAGCGAG-------GGGACGACCGGUC------------AAGC------------------------------GACCGAUCGACCC-GGUA---------------------------------------------------------------------------------------------------CCAAU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...-................--------------------........>>>>>>>..<<<<<----------------------......--------------------------->>>>><<<<..<<<<<<-----------------..................------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<....<<<<<<<----------------....------------------>>>>>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>>.->>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<.<<.-<<<.......>>>-..>>>>>>>>>>-------<<<.<<<.<<<<<------------....------------------------------>>>>>.>>>.>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Chlo_lu.S516-2      AAGUCUGGUGAAC-UUCGACAGUUCCUUUU--------------------GCUGUUGACGCCAGAGGUAGUC----------------------GAUAGA---------------------------GACUAGUCGAUGCAGCC--------------------GAUUGAUGAUCGGGU-------------GGCUGCC-GGCAAGACGACCUGGAACGGGGAAGGCCUUCGAUGGGCA----------------GCGAUGG-------------UGCUUCAACGGCUGAUCCCGUGGCGAGCUGGCGGAGA--------GCGA-----UCUCCGUCG-AGCCGUC-GUA-AC-GCACGCUAAGGCGUCGGUGGACUCUC-------------GAUA----------------GAGAGUCCGCUUAAGGGACGUGCUAAUCC-CAGCC-GAUGAGAAAGGCUG--CUCGCUUGACUA-GGUCCUGAUCGCC-GAAGCUAGCGAG-------GGGGCGACCGGUC------------AAGC------------------------------GACCGAUCGUCCC-GGUA---------------------------------------------------------------------------------------------------CCAAU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<...-................--------------------........>>>>>>>..<<<<<----------------------......--------------------------->>>>><<<<..<<<<<<--------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<...<<..<<<<----------------.......------------->>>>>>...>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>>.->>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<.<.<<.-<<<.......>>>-..>>>.>>>>>>-------<<<<<<<.<<<<<------------....------------------------------>>>>>.>>>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Wre.S516            AAGUCUGGUGAACCUUCUGCAGGCGUAGACUGUUUCUAU-----------GCUGUUGACGCCAGAGAUAGUGGGGUGGCUGC------------RCUCG-------------GGCAGCCAUUAAGCCUGCUAGUCGAUGCAGCC-------------------CAGUUGUGGAYCGGGU-------------GGCUGCC-GGCAAGAUGACCUGGAACGGGGUAGGCCUU-------------------------CAGAAUACA------------------AGGGCUGAUCCCGUGGCGAGCUGUCGGAGG--------GCGA-----CCUCCGAUG-AGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCUGACUCUC-------------AGAA-----------------AGAGCCGGCUUAAGGGACGUGCUAAUCC-CAGCC-GAUGACAAAGGCUG--CCUCGUGGAAUA-GACCCCGAUCGUC-GAAGCCUCGAGG-------GAGGGNGGC----------------UCAG----------------------------------GCCGCCCUC-GGUA---------------------------------------------------------------------------------------------------UCAAU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<.............................-----------........>>>>>>>..<<<<<<<<<<<<<<<------------.....-------------.>>>>>>>>....>>>>>>><<<<..<<<<<<-------------------................------------->>>>>>>->>>..<<<<.<<<...<<<<<<<.<<<<<<-------------------------.........------------------>>>>>>.>>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>>.->>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<.-------------....----------------->>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<.<<....-<<<.......>>>-....>>.>>>>>-------<<<<<.<<<----------------....---------------------------------->>>.>>>>>-....---------------------------------------------------------------------------------------------------...>>--..-............. 
Sba.S516            AA-UCUGGUGGGCUAUCAACGCCAUCAUUUAAAAU---------------GCUGUUGACGCCAGAGAUAGUGGGGCAGCUUG------------GAAA---------------CGAGCUGUUAUGCCUGCUAGUCGAUGCAGCC--------------------GACUCCUGAUCGGGU-------------GGCUGCC-GGCAAGACGACCUGGAACGGGGAAGGCCCUCACCUCCUUUGC-------------CCUG-----------GCGGAGGAGACAUGGGUUAAUCCCGUGGCGAGCUGGUGCGGG--------GUGA-----CCUGCACAACAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCCGACUCUCUUUC---------UUAUUUU---------GAUCGAGAGCCGGCUUAAGGGACGUGCUAAACC-CACCC-GAUGAGAAAGGGUG--CCCUGGACAUGA-GAGCCCGAUCCUCGAAGGUCCGUGGG-------AGGCAAGAGUGUUGGA--------AGGAAAUG----------------------UCC----AGACACUGCCU-GGUAUCA----GUCAAUCAGAAGCUCUCACACA-----------CAUGUGCAGU--UGUGUGAGUGGAUAUGAC----------------------------GUCAUU--GG-CCAGCAGCCGCGG
                    ..-<<<<<<<.........................---------------........>>>>>>>..<<<<<<<<<<<<<<<------------....--------------->>>>>>>>....>>>>>>><<<<..<<<<<<--------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<....<<<<<<<<<-------------....----------->>>>>>>>>....>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>..>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<.<<<<<..<<---------.......--------->>..>>>>>.>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>....>>>>>.>>>-------<<<<<...<<<<<<<<--------........---------------------->>>---->.>>>>>>>>>-.......----<<<<<<<.......<<<<<<<<-----------..........-->>>>>>>>..>>>.>>>>----------------------------....>>--..-............. 
Tar.S516            AAGUCUGGUGAAAGAAAA--------------------------------GCUGUCGACGCCAGAGAUAGUAGGGCGGUG--------------UUG------------------UACCGUUAAGCCUGCUAGUCGAGUAGCCA---------------------AUUAUCUAUCGGGU-------------GGCUACC-GGCAAGACGACCUGGAACGGGAA-GGCCUUCAAACUGUUUGC-------------AUU---------------AGCAGCUGUUUGGUUGAUCUCGUGGCGAGCUUGCAUAGG--------GUGA-----CCUGUGCA-AAGCCGUC-GUA-AC-GSACGGUAAGGCGUCGGCUGGUCUC--------------UGACA-----------------GAGUCAGCUUAAGGGACGUGCUAAACC-CAUCC-GAUGAAAAAGGAUG--CCUUGAUCAACA-GAGCCCGAUACUC-AAAGGUUCAAGG-------GGGUGAAGAUA-AUAGG-------AGGAAAUG----------------------CCUAUUAUC-AAACAUNN-GGUAC--------------------------------------------------------------------------------------CUUCAGAAAUGANGUUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<........--------------------------------........>>>>>>>..<<<<<<<<<<<<<--------------...------------------>>>>>>....>>>>>>><<<<.<<<<<<<---------------------.............>------------->>>>>>>->>>..<<<<.<<<...<<<<<<.-<<<<..<<..<<<<<...-------------...--------------->>>>>.>>...>>>>..>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<--------------.....----------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-...>>>>.>>>>-------<<<<<..<<<<-<<<<<-------........---------------------->>>>>>>>>-...>>>>>-.....--------------------------------------------------------------------------------------...............>>--..-............. 
Tus.S516            AAGUCUGGUGAAUAUAGACAGAGUCUAUUA--------------------GCUGUUGACGCCAGAGAUAGUAGGGCGGCA--------------U--------------------UGCCGUUAUGCCUGCUAGUCGAGCAGUCC-------------------AUUACAUUGAUCGGGU-------------GACUGCC-GGCAAGACGACCUGGUACGGGGGAGACCUUCAGACUGUU-GC-------------ACA---------------GCACCAGUUGUGGUUAAUCUCGUGGCGAGCUUGCAAAUGG-------GUGA-----CCUUUGCA-AAGCCGUU-GUA-AC-GCACNGUAAGGCNUCGGCUGGUCUC--------------UGANNN----------------GAGUCNGCUUAAGGGACGUGCUAAACC-CAUCC-AAUGACAAAGGAUG--CCUUGAACACUA-GAGCCCGAUCCUCAAAGGUUCAAAGG-------GGGUGACUGUGCAUGGG-------AGGAAAUG----------------------CCCAUGUACGAAACACCU-GGUA--244nt-----------------------------------------------------------------------------------------------UU--G--CCAGCAGCCGCGG
                    ...<<<<<<<....................--------------------........>>>>>>>..<<<<<<<<<<<<<--------------.-------------------->>>>>>....>>>>>>><<<<.<<<<<<.-------------------................------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<....<<<<<.<-<<-------------...--------------->>>.>>>>>..>>>>..>>>>>><<<<.<<<<<<<<<.<<-------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<--------------......---------------->>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>....>>>>.>>>>-------<<<<<..<<<<<<<<<<-------........---------------------->>>>>>>>>>...>>>>>-....--~~~~~----------------------------------------------------------------------------------------------->>--.--............. 
Am_sp.S516          AAGUCUGGUGAACAUCUUCAACAAAAAGAAAAAUU---------------GCUGUUGACGCCAGAGAUAGUAGGGCACC---------------UUCUCC----------------GGUGUUAUGCCUGCUUAUCGGAUGCAGC----------------AGGCUHUGVSWSWUCAGGC------------UGGCUGCCUGGCGAGAUGACCUGGUACGGGGAAGGCCUUCUCCCUCCGC---------------CUU----------------GUGGAGGACUGGUUGAUCCCGUGGCGAGCCUGUAUAGA--------GCGA-----UCUUUACA-AGGCCGUC-GUA-AC-GCACGGUAAGGCAUCGGCUCACCUCAA------------UUUA----------------UUGAGUGGGCUUAAGGGACGUGCUAAACC-CAUCCCGAUGAUAAAGGAUG--CUCUGACCAUUA-GCUCCCGAUCAGC--GAAGGUCAAGG-------GGACAAAAGUGUUUGG--------AGGAAAUGC---------------------------CCAAACACGUCC--GUA-------CUUGACUGA------------------------UUUAAUUAUCU-----------UCAGCAAG-----------------------CAAGAACGAUU--G--CCAGCAGCCGCGG
                    ...<<<<<<<.........................---------------........>>>>>>>...<<<<<<<<<<<---------------......---------------->>>>>....>>>>>>.<<<<<..<<<<<----------------...................------------..>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<<.....<<<<<<<---------------...---------------->>>>>>>...>>>>..>>>>>><<<<.<<<<<<<.<<<--------....----->>>.>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<.<<<<------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<..........>>>>>--<<<<<<<<....-<<<.......>>>--...>>>>>>>>-------<<<<....<<<<<<<<--------.........--------------------------->>>>>>>>>>>>--...-------<<<<.<<<<------------------------...........----------->>>>>>>>-----------------------.........>>--.--............. 
Kfl.S516            AAGUCUGGUGAACAUUCAACAACA--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCGGGCUCAAGUGUACAUUACAUAUUAUUGUUCACUAAGGAGUCUGUUACGCCUGCUAGUCGAGCAACC---------------------AACUACUGGUCGGGC-------------GGUUGCC-GGCAAGAUGACCUGGUACGGGGAAGGCCU--------------------------UCAUGCUAAC------------------AGGCUAAUCCCGUGGCGAGCUUGUU-GGG--------GUGA-----CCUCUUCA-AAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCCGGUCUCUUU-----------CUGCGGA------------AAAGAGUCGGCUUAAGGGACGUGCUAAACC-CAUCC-GAUGAUAAAGGAUG--CCACAAGCAAUA-GACCCCGACCGUC-AAAGGCUUGUGG-------GGGCCAUUGGGCAAGG--------AGGAAAUG---------------------CCUUGCACUUAAGCCGCCC-GGUAU------GUGAAAGAAGCAGG-------------------103nt--------------CCUGCUAACAC------------------------------CUUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<<<<<<.<<<<.<<<.<<.....>>.>>>.>>>>...>>>>>>>>....>>>>>>><<<<.<<<<<<---------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------..........------------------>>>>>..>>>>>><<<<.<<<<<..-<<<--------....----->>>...>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<<<<-----------.......------------>>>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<....<<<<<<<<--------........--------------------->>>>>>.>>......>>>>-.....------<<<.....<<<<<<-------------------~~~~~-------------->>>>>>..>>>------------------------------..>>--..-............. 
Kni.S516-1          AAGUCUGGUGAACAUUCAACAACA--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCGGGCUCAAGUGUACAUUACAUAUUAUUGUUCACUAAGGAGUCUGUUACGCCUGCUAGUCGAGCAACC---------------------AACUACUGGUCGGGC-------------GGUUGCC-GGCAAGAUGACCUGGUACGGGGAAGGCCU--------------------------UCAUGCUAAC------------------AGGCUAAUCCCGUGGCGAGCUUGUUGGGG--------GUGA-----CCUCUUCA-AAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCCGGUCUCUUU-----------CUGCGGA------------AAAGAGUCGGCUUAAGGGACGUGCUAAACC-CAUCC-GAUGAUAAAGGAUG--CCACAAGCAAUA-GACCCCGACCGUC-AAAGGCUUGUGG-------GGGCCAUUGGGCAAGG--------AGGAAAUG---------------------CCUUGCACUUAAGCCGCCC-GGUAU------GUGAAAGAAGCAGG-------------------103nt--------------CCUGCUAACAC------------------------------CUUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<<<<<<.<<<<.<<<.<<.....>>.>>>.>>>>...>>>>>>>>....>>>>>>><<<<.<<<<<<---------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------..........------------------>>>>>..>>>>>><<<<.<<<<<..<<<<--------....----->>>>..>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<<<<-----------.......------------>>>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<....<<<<<<<<--------........--------------------->>>>>>.>>......>>>>-.....------<<<.....<<<<<<-------------------~~~~~-------------->>>>>>..>>>------------------------------..>>--..-............. 
Kni.S516-2          AAGUCUGGUGAACAUUCAACAACA--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCGGGCUCAAGUGUACAUUACAUAUUAUUGUUCACUAAGGAGUCUGUUACGCCUGCUAGUCGAGCAACC---------------------AACUACUGGUCGGGC-------------GGUUGCC-GGCAAGAUGACCUGGUACGGGGAAGGCCU--------------------------UCAUGCUAAC------------------AGGCUAAUCCCGUGGCGAGCUUGUUGGGG--------GUGA-----CCUCUUCA-AAGCCGUC-GUA-AC-GCACGCUAAGGCAUCGGCCGGUCUCUUU-----------CUGCGGA------------AAAGAGUCGGCUUAAGGGACGUGCUAAACC-CAUCC-GAUGAUAAAGGAUG--CCACAAGCAAUA-GACCCCGACCGUC-AAAGGCUUGUGG-------GGGCCAUUGGGCAAGG--------AGGAAAUG---------------------CCUUGCACUUAAGCCGCCC-GGUAU------GUGAAAGAAGCAGG-------------------103nt--------------CCUGCUAACAC------------------------------CUUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<<<<<<.<<<<.<<<.<<.....>>.>>>.>>>>...>>>>>>>>....>>>>>>><<<<.<<<<<<---------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<<--------------------------..........------------------>>>>>..>>>>>><<<<.<<<<<..<<<<--------....----->>>>..>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<<<<-----------.......------------>>>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<....-<<<.......>>>-....>>>>>>>>-------<<<<....<<<<<<<<--------........--------------------->>>>>>.>>......>>>>-.....------<<<.....<<<<<<-------------------~~~~~-------------->>>>>>..>>>------------------------------..>>--..-............. 
Ksu.S516            AAGUCUGGUGAACAUUCAACAAAA--------------------------GCUGUUGACGCCAGAGAUAGUAGGGCGGCUCUC-----------GAAAA------------GAGAAACCGUUAUGCCUGCUAGUCGAGCAGCC---------------------AACCACCGGUCGGGG-------------GGCUGCC-GGCAAGACGACCUGGUACGGGGAAGGCCUUCGAAUCUGUC---------------GAGA--------------------GACAGGGCUAAUCCCGUGGCGAGCUUGCAGUAGG-------GUGA-----CCUCUGCA-AAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCUGGUCUCUG------------CUAG----------------CAGAGCCGGCUUAAGGGACGUGCUAAACC-CAUCC-GAUGAUAAAGGAUG--CCACAAACUUUA-GAACCCGACCAUC-GAAGGUUUGUGG-------GGGCCAUGGCGCUAGG--------AGGAAAUG---------------------CCUAGUGCCGA----GUCC-GGUAU-------------------------------------------------------------------------------------------------UGAAUU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<..............--------------------------........>>>>>>>..<<<<<<<<<<<.<<<<-----------.....------------>>>>..>>>>....>>>>>>><<<<.<<<<<<---------------------...............------------->>>>>>>->>>..<<<<.<<<...<<<<<<..<<<<.......<<<<<---------------....-------------------->>>>>>>>>..>>>>>><<<<.<<<<<<<<.<<<-------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<.<<<<<------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<<<<.-<<.........>>-.>>>>>>>>>>>-------<<<<..<<<<<<<<<<--------........--------------------->>>>>>>>>>.---->>>>-.....-------------------------------------------------------------------------------------------------....>>--..-............. 
Ksp.S516            AAGUCUGGUAA---------------------------------------AAUGCUGUUGCCAGAGAUAGUAGGACGCCG--------------CACGA----------------UGGCGUUAAGCCUGCUAGUCGAGAAGCC----------------ACUAUUUGUUUGCAUGGGCU-------------GGCUUCC-GGCAAGACGACCUGGAACGGGGAAAGCCAUCACACAGC-----------------UUCG-----------------GCUGUGC-GGCCAAUCCCGUGGCGAGCUCGCAAAGG--------GCGA-----CUUUUGCA-GAGCCGUC-GUA-AC-GCACGGUAAGGCGUCGGCUGACUCUC-------------UCCG----------------GGGAGUUGGCUUAAGGGACGUGCUAACCC-CAUCC-GAUGACAAAGGAUG--CUCAGAGCAGUA-GCACCCAUGCUGC-GAUGGCUUUGGG-------GAACUCGAGUGUGGUG--------AGGAAAUG---------------------------CUCCACACUGUUC-GGUAC---------------------------------------------------------------------------------------------------AAGU--GG-CCAGCAGCCGCGG
                    ...<<<<<<<.---------------------------------------........>>>>>>>..<<<<<<<<<<<<<--------------.....---------------->>>>>>....>>>>>>><<<<.<<<<<<----------------....................------------->>>>>>>->>>..<<<<.<<<...<<<<<<...<<<....<<<<<<-----------------....----------------->>>>>>.->>>...>>>>>><<<<.<<<<<<<<<<<--------....----->>>>>>>.->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<-.........>>>>>--<<<<<<<<.<<<-<<<....>>>>>>-....>>>>>>>>-------<<<<...<<<<<<<.<--------........--------------------------->.>>>>>>>>>>>-.....---------------------------------------------------------------------------------------------------..>>--..-............. 
Cka.L2066           AAGAAGACCCUGAA--------------------------------AGAACAGCUCAACGGGGUCGAAAACGG---------------------CGCCCGUCG-----------------------CCGUUAGUCCA--GC-GGCCA-------------------GGCAGUUGCAGG--------------UGGCCGCGGGCGAGACAACCUGGUACGGGGAAGCCUAAGGGCGCCG-----------------AGAGA---------------UGGUGCCUACGGUAAUCCCGUGGCGAGCCCUU-------------ACAGAAG---------GGGGGCCGUC-GUA-AC-GCGCGGUAAGGUGUCGGUCGUUGCAGAGGCCCU------CUGG-----------GGGGCCCCUCUCGGCUUAAGGUACGUGCUAAUCC-CAGGC----GAAA--GCCUG--CGCCUGUUGGGA-GUGCCUGCAGCAC-GAACUCCAGGCG-------GGUGGGCA--------GUGGGCUUCGACCGCGGUCGCGGCCCAU-----------------GUUGCCCUGCCGGCAA-------GCUGACCAU------------------------CGCGU----------------AUGGCCAGC--------------------------GAGUAUAU--G--GUUGAGCUUGACU
                    .....<<<<<<<..--------------------------------............>>>>>>>...<<<<<---------------------.........----------------------->>>>>.<<<<.--<<-<<<<<-------------------............-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<...<<<<<<<<-----------------.....--------------->>>>>>>>..>>>..>>>>>><<<<.<<<<<<-------------.......--------->>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<....<<.<<<<<<------....----------->>>>>>.>>..>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<<<..<<..-<<<<.....>>>>-...>>.>>>>>>-------<<<<<<<<--------<<<<<<<.<<<<....>>>>.>>>>>>>-----------------..>>.>>>>>>.....-------<<<<.<<<<------------------------.....---------------->>>>.>>>>--------------------------......>>--.--............. 
Cpro.L2066          AAGAAGACCCUGAG----------------------------------AGCAGCUCAACGGGGUCCAAAAUAG---------------------CGCACAUCG-----------------------CUAUUAGUCCA--GC-GGCCG-------------------ACCAUCUGCAGG--------------UGGCCGCGGGCGAGACAACCUGGUACGGGGAAGCCUAAGGGCGCC------------------GAGAA----------------GGCGCCUACGGUGAUCCCGUGGCGAGCCCCCUCCUUGCAC----UACA-----GUGCAGCGGGGGCCGUC-GUA-AC-GCGCGGUAAGGUGUCGGUCGCGGGGGUGGGGGAGUUCGCCCA--GCGAGGCCCCCCCAGCCCCUCCGGCUUAAGGUACGUGCUAAACC-CAGGC----GAAA--GCCUG--CGCCCAGUCGGA-GUGCCUGCAGCAC-GAACUCUGGGCG-------GGUGGCCGGGGCGA----UGCGUCGAUCGAUCGAGAGAGCGCG-------------------GCCGCCCGCCGGUAG------------------------------------------------------------------------------------------------UUGAAAAU--G--GUUGAGCUUGACU
                    .....<<<<<<<..----------------------------------..........>>>>>>>...<<<<<---------------------.........----------------------->>>>>.<<<<.--<<-<<<<<-------------------............-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<...<<<<<<<------------------.....---------------->>>>>>>..>>>..>>>>>><<<<.<<<<<<...<<<<<<----....----->>>>>>.>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<.<<<<<<<<<<<.<<<<<<...-->>>>.>>.>>>>>>.>>>>>.>>>>>.......]]]]]].<...-<<<<<----....-->>>>>--<<<<<<<.<<..-<<<<.....>>>>-...>>>>>>>>>-------<<<<.....<<<<.----<<<<<<..<<....>>..>>.>>>>-------------------..>>>>>>>>.....------------------------------------------------------------------------------------------------.......>--.--............. 
Pte.L2066           AAGAAGACCCUGAA-----------CGCGACUGCGGUUCGUUCCACGACAAGCAUCGACGGGGUCAAGAGCGGUCACGGACUG-----------AGCCU----------------CAGUCCGGGUGCCGUUAGUCCAAUGC-GGCCGCAGC------------------AUCUGUGGG--------------UGGCCGCGGGCGAGACAACCUGGAACGGGGGAGCCUGACGGCUGGAGCC--------------UGCG----------------GGCCCAGCACGGUAAUCCCGUGGCGAGUCCCU-------------CUCG------------GGGGGCCGUC-GUA-AC-GCGCGCCAAGGUGUCGGUUGGUGGCC-------------UCCC----------------GGCCGCCGGCUUAAGGUACGUGCUAAUCC-CAGGC----GAAA--GCCUG--CCCGGAGCUGGA-GCGCCCACAGCGC-AAAGGCGUCGGG-------AGCC--GCAAGUGA----CGUCUAGGAGGAAAUGCCUGGACG------------------------GAGGCUGGUAGGG-----GCCGUCGCGC-----------------------GCCC----------------GCGCGACGGC--------------------------------AU--G--GUUGAGCUUGACU
                    .....<<<<<<<..-----------.................................>>>>>>>...<<<<<<..<<<<<<<-----------.....---------------->>>>>>>...>>>>>>.<<<<...<<-<<<<<<.<<------------------....>>..>-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<.....<<<<<.<<<--------------....---------------->>>>>>>>..>>>..>>>>>><<<<.<<<<<<-------------....------------>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<..<<<...-<<<<.....>>>>-...>>>..>>>>-------<<<<--........----<<<<<<<<........>>>>>>>>------------------------..>>>>.......-----<<<<<<<<<<-----------------------....---------------->>>>>>>>>>-------------------------------->>--.--............. 
Co_sp-3.L2066       AAGAAGACCCUGAA------------------------------CGAUGACGCAUCAACGGGGUCAGUAGCGG---------------------UCAGCGUG------------------------CCGCUAGUCCA--GUCGGCCA--------------------GCAUCUGUGGG--------------UGGCCACGGGCGAGACAACCUGGUACGGGGGAGCCUACGGGGGAGGA----------------CUCG----------------UCCUCCCUACGGUAAUCCCGUGGCGACCUUUCCACUGG-------ACUU------CCACUGGAGAGGCGUC-GUA-AC-GCGCGGAAAGGUGUCGGUUGGCGGUC-------------GCGA----------------GGCCGCCGGCUUAAGGGACGUGCUAAACC-CUGGC----GAAA--GCCAG--CCCGCCGACGGA-GCGCCCCCAGCGC-AAAGUCGUCGGG-------GGUC--GUACUUACACCACGCCUGGGAGGAAAUGCCCUGGCG------------------------GAGACCGGUAG-------CCUCUGCUGGCCU--------------------GCAA--------------AGGCCGCGGGGG------------------------------AAUU--G--GUUGAGCUUGACU
                    .....<<<<<<<..------------------------------..............>>>>>>>...<<<<<---------------------........------------------------>>>>>.<<<<.--<<.<<<<<--------------------...........-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<....<<<<<<<<----------------....---------------->>>>>>>>..>>>..>>>>>><<<<.<<<<<<<<.<<<-------....------>>>.>>>>>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<.<<<<...-<<<<.....>>>>-...>>>>.>>>>-------<<<<--............<<<<.<<<........>>>.>>>>------------------------..>>>>.....-------<<<<<<<.<<<<<--------------------....-------------->>>>>>>>>>>>------------------------------..>>--.--............. 
Man.L2066-2         AAGAAGACCCUGAA----------------------------------CAAGCAUCAACGGGGUCAAUAGCGGU--------------------CACGU--------------------------GCCGCUAGUCCA--GC-AGCCG-------------------AUCAGUUGUGGG--------------UGGCUGCGGGCGAGACAACCUGGUACGGGGGAGCUACGGGGGAGGGCG---------------GCUGG-----------CGCGUCCUCC-UACGGUGAUCCCGUGGCGAGCCU---------------CUCG--------------GGGCCGUC-GUA-AC-GCGCGGAAAGGUGUCGGUCGGUGGUC-------------GCGA----------------GGCCGCCGGCUUAAGGGACGUGCUAAACC-C-GGC----GAAA--GCCUG--CCCUGUGACGGA-GCGCCCACAGCGU-AAAGUCCCAGGG-------GGCC--GUACUUGUACAACACUCGGGAGGAAAUGCCCGGGCG------------------------GAGGCCGGUAU------------------------------------------------------------------------------------------------AUUUUAGU--G--GUUGAGCUUGACU
                    .....<<<<<<<..----------------------------------..........>>>>>>>...<<<<<<--------------------.....-------------------------->>>>>>.<<<<.--<<-<<<<<-------------------............-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<..<<<<<<..<<<---------------.....----------->>>.>>>>>>-...>>>..>>>>>><<<<.<<<<---------------....-------------->>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]]..<<.-<-<<<----....-->>>.>--<<<<<.<<<...-<<<<.....>>>>-...>>>.>>>>>-------<<<<--............<<<<<<<<........>>>>>>>>------------------------..>>>>.....------------------------------------------------------------------------------------------------......>>--.--............. 
Man.L2066-1         AAGAAGACCCUGAA----------------------------------CAAGCAUCAACGGG-UCAAUAGCGGU--------------------CACGU--------------------------GC-GCUAGUC-A--GC-AGC-GAUC-------------------AGU-GUGGG-------------UGGCUGCGGGGCGAGACAACCUGGUACGGGGAAGCUGCGGGGGAGGGCG---------------GCUGG-----------UGCGUCCUCUCUACGGUGAUCCCGUGGCGAGCCUC--------------UUCG-------------GGGGCCGUC-GUA-AC-GCGCGGAAAGGUGUCGGUUGGCGGUC-------------GCGA----------------GGCCGCCGGCUUAAGGGACGUGCUAAACC-CA-GC----GAAA--GCCUG--CCCUGUGACGGA--CGCCCACAGCGC-AAAGUC-CAGGG-------GGCC--GUACAUACACGACGCCCGGGAGGAAAUGCCCGGGUG------------------------GAGGCCGGUGU------------------------------------------------------------------------------------------------AAUUUAAU--G--GUUGAGCUUGACU
                    .....<<.<<<<..----------------------------------..........>>>>->>...<<<.<<--------------------.....-------------------------->>->>>.<<<-.--<<-<<<-.<<<-------------------...-...>>------------->.>>>>>..>>>..<<<<.<<<...<<<<<<..<<<..<<<<<<..<<<---------------.....----------->>>.>>>>>>....>>>..>>>>>><<<<.<<<<<--------------....------------->>>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<...-<<-<<----....-->>.>>--<<<<<.<<<...--<<<.....>>>.-...>>>->>>>>-------<<<<--............<<<<<<<<........>>>>>>>>------------------------..>>>>.....------------------------------------------------------------------------------------------------.......>--.--............. 
Cal.L1923           ACUAUGACUCUCAA-------------------------------------CCUAUAAGGGAGGCAAAAGUAGGGACGCCAUGGUUU-CCA---GAAA-------UGG-GCCGCGGUGUUUUUGACCUGCUAGUCGA-UCU-GGCCAGACGU-----------------AUCUGUGGG--------------UGGCCAGCGGCGACAUAACCUGGUACGGGGAAGGCCUCGAAGCAGUGUUCACCUUGGGAGUGCGCAAGCACAAAGAGGUGAGUGGUGUAUGGGGUUAAUCCCGUGGCGAGCCGUCAGGGC--------GCGA----GUUCUGGCAGUGGCCGUC-GUA-GA-GCACGGAAAGGUAUGGGCUGGCUC---------------UCU-------------------GAGUCGGCUUAAGGUACGUGCCGUCCCACACGAU---GAAA-AGUGUG--CGGUGCAGAAUA-GUUCCCACAGAAC-GAAGCUGCGCCGG------AGAAA-----------------------GCGA-----------------------------------UUUCU----------------------------------------------------------------------------------------------------UGGAGCAAU--G--CUUAAGGUAGCCA
                    ....<<.<<<<<..-------------------------------------.......>>>>>.>>..<<<<<<<<<<<<.<<<..<-<<<---....------->>>->>>>.>>>>>>.....>>>>>>.<<<<.-.<<-<<<<<..<<<-----------------....>>>..-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<<<<<..<<<.<<<<<<<<<<....<<<<....>>>>...>>>>>>>>>>.>>>.>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....---->>>>>>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]]<<....<<<<.<---....->.>>>>--<<<<<<<<....-<<<<.....>>>>-....>>>>>>>>.------<<<<<-----------------------....----------------------------------->>>>>----------------------------------------------------------------------------------------------------.......>>--.--............. 
Cal.L1923,1         ACUAUGACUCUCAA-------------------------------------CCUAUAAGGGAGGCAAAAGUAGGGACGCCAUGGUUU-CCA---GAAA-------UGG-GCCGCGGUGUUUUUGACCUGCUAGUCGA-UCU-GGUUAAUUA-----------517nt-AAGCUGUGGG--------------UAACCAGCGGCGACAUAACCUGGUACGGGGAAGGCCUCGAAGCAGUAUAUAUUUUUGGG----75ntCUUGAAGA-AAUAUAUGUUGUAUGGGGUUAAUCCCGUGGCGAGCCGUCAGGGC--------GCGA----GUUCUGGCAGUGGCCGUC-GUA-GA-GCACGGAAAGGUAUGGGCUGGCUC---------------UCU-------------------GAGUUGGCUUAAGGUACGUGCCGUCCCACACGAU---GAAA-AGUGUG--CGGUGCAGAAUA-GUUCCCACAGAAC-GAAGCUGCGCCGG------AGAAA-----------------------GCGA-----------------------------------UUUCU----------------------------------------------------------------------------------------------------UGGAGCAAU--G--CUUAAGGUAGCCA
                    ....<<.<<<<<..-------------------------------------.......>>>>>.>>..<<<<<<<<<<<<.<<<..<-<<<---....------->>>->>>>.>>>>>>.....>>>>>>.<<<<.-.<<-<<<<<..<<-----------~~~~~-......>>..-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<<<<<..<<<<<<<<<<<<<<<<<<----~~~~>>>>>>..->>>>>>>>>>>>.>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....---->>>>>>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]]<<....<<<<.<---....->.>>>>--<<<<<<<<....-<<<<.....>>>>-....>>>>>>>>.------<<<<<-----------------------....----------------------------------->>>>>----------------------------------------------------------------------------------------------------.......>>--.--............. 
Cdu.L1923-1         ACUAUGACUCUCAA-------------------------------------CCUAUAAGGGAGGCAAAAGUAGGGACGCUAUGGUUU-CCA---GAAA-------UGG-GCCGAGGUGUUUUUGACCUGCUAGUCGA-UCU-GGUUAAUUA-----------176nt-AAGCUGUGGG--------------UAACCAGCGGCGACAUAACCUGGUACGGGGAAGGCCUCGAAGCAGUAUAUAUUUUUGGG----76ntCUUGAAGA-AAUAUAUGUUGUAUGGGGUUAAUCCCGUGGCGAGCCGUCAGAGC--------GCGA----GUUCUGGCAGUGGCCGUC-GUA-GA-GCACGGAAAGGUAUGGGCUGGCUC---------------UCU-------------------GAGUCGGCUUAAGGUACGUGCCGUCCCACACGAU---GAAA-AGUGUG--CGGUGCAGAAUA-GUUCCCACAGAAC-GAA-CUGCGCCGG------AGAAA-----------------------GCGA-----------------------------------UUUCU----------------------------------------------------------------------------------------------------UGGAGCAAU--G--CUUAAGGUAGCCA
                    ....<<.<<<<<..-------------------------------------.......>>>>>.>>..<<<<<<<<<<<<.<<<..<-<<<---....------->>>->>>>.>>>>>>.....>>>>>>.<<<<.-.<<-<<<<<..<<-----------~~~~~-......>>..-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<<<<<..<<<<<<<<<<<<<<<<<<----~~~~>>>>>>..->>>>>>>>>>>>.>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....---->>>>>>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]]<<....<<<<.<---....->.>>>>--<<<<<<<<....-<<<<.....>>>>-...->>>>>>>>.------<<<<<-----------------------....----------------------------------->>>>>----------------------------------------------------------------------------------------------------.......>>--.--............. 
Cdu.L1923-2         ACUAUGACUCUCAA-------------------------------------CCUAUAAGGGAGGCAAAAGUAGGGACGCUAUGGUUUCCCA---GAAA-------UGGGGCCGAGGUGUUUUUGACCUGCUAGUCGA-UCU-GGUUAAUUA-----------175nt-AAGCUGUGGG--------------UAACCAGCGGCGACAUAACCUGGUACGGGGAAGGCCUCGAAGCAGUAUAUAUUU-UGGG----76ntCUUGAAGACAAUAUAUGUUGUAUGGGGUUAAUCCCGUGGCGAGCCGUCAGAGC--------GCGA----GUUCUGGCAGUGGCCGUC-GUA-GA-GCACGGAAAGGUAUGGGCUGGCUC---------------UCU-------------------GAGUCGGCUUAAGGUACGUGCCGUCCCACACGAU---GAAA-AGUGUG--CGGUGCAGAAUA-GUUCCCACAGAAC-GAAGCUGCGCCGG------AGAAA-----------------------GCGA-----------------------------------UUUCU----------------------------------------------------------------------------------------------------UGGAGCAAU--G--CUUAAGGUAGCCA
                    ....<<.<<<<<..-------------------------------------.......>>>>>.>>..<<<<<<<<<<<<.<<<..<<<<<---....------->>>>>>>>.>>>>>>.....>>>>>>.<<<<.-.<<-<<<<<.<<<-----------~~~~~-......>>>.-------------->>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<<<<<..<<<<<<<<<<<<<-<<<<----~~~~>>>>>....>>>>>>>>>>>>.>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....---->>>>>>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<---------------...------------------->>>>>>>>>.......]]]]]]<<....<<<<.<---....->.>>>>--<<<<<<<<....-<<<<.....>>>>-....>>>>>>>>.------<<<<<-----------------------....----------------------------------->>>>>----------------------------------------------------------------------------------------------------.......>>--.--............. 
Sps.L1926           AUGACUCUCUUAAA------------------ACUCGAGUUAGUUUUCAUUGCUACUUUGAGAGAGAUAGGAGGGCAAGGUCUG----------UAGC-------------CAGAUCUUGUUAUGCCUUCUAGUCGA--GG-UGCCCAC------------------UAAGUUGUGGG--------------UGGCACCCGGCAAGAUAACCUGGUACGGGGAAGGCUUACCUGAGAAGGAACGGGCACCGC---UUAUA--GCAAGGUGCCUGCUCUGGAGGGUGCUAAUCUCGUGGCGAGCCGAUCAAGA--------GUGA----UCUUGGUCAAUGGCCGUC-GUA-UC-GCGCGGAAAGGUAUCGAUGGGCUCGG-------------UCCG----------------CCGAGUCUGUUUAAGGGACGUGCAAGUCC-GAUGC----GAAA--GCAUC--AGUGUUACUGGA-GCACCCACAAUGC-AAAGGUAUCACU-------AGCC--------GUACAUAU-UAC------GAGAGCUCUGAGGAAAUGCUGAGCUC---------GA-GGCUGGUA---------------------------------------------------------------------------------------------------UUAAAU--G--AAGGUAGCCAAAU
                    ....<<<<<<<<..------------------..........................>>>>>>>>.<<<<<<<<<<<<<<<<<----------....------------->>>>>>>>>>....>>>>>>><<<<.--<<-<<<<<<<------------------......>>>..--------------.>>>>>>>>>>..<<<<.<<<...<<<<<<..<<<..<<<<.....<<<.<<<<<<<<<<---.....-->>..>>>>>>>>.>>>...>>>>>>>..>>>>>><<<<.<<<<<<<<<<<--------....---->>>>>>>>...>>>>>>>-...-[.-[[[[[...>>>>>>><<<<<<<<<<<-------------....---------------->>>>>>>>>>>.......]]]]]].<<..-<<<<<----....-->>>>>--<<<<.<<<<...-<<<.......>>>-...>>>>.>>>>-------<<<<--------........-...------..........................---------..->>>>....---------------------------------------------------------------------------------------------------....>>--.--.............