P1                              P10 P1'        P2                   P2'     P3          P4      P5        P5a            P5b           P5b'     P5c          P5c'                P5a'    P5d                      Pd'     P5'       P4'P6      P6a                                  P6a'    P6'     P7         P3'  P8                                          P8'           P7'P9.0 P9        P9'       P9.1           P9.1'                P9.0' P10'
Aab.mS569-1         uuuaguaggu--GCUUUGUGAUGUAGGAUCUCACAUG---UGUGCCUA---------------------------------AAACUGCCAAACUCCGGGGACACCCUAAAGCUUCUGGUACCAAACUAUAUUC-GAAAGACUAUAUGUGGCUGAACUAAUUACUCAG-GUAUGGUAAUAAGUCAGAAGAUAAUC----------GAAA---------GAGCAAUGGGUUAUCGCGGAUCUAAACCAAUAGCA-----------(71)-----------UGUUAUUGUAAAAGAGCAACGAGUAGACGGUAGUUACAUAGGUAAAUUU--------UCU----------AGGUUUCCUAUGUUAAGGUGUAC-UCUAAUGGGUUUCGAGAGAAAUUAUCAAAUCAGA-(1019)-ACGGAU-------------UGCCAUG--uuaaagggua
                    .....<<<<<--<<.......................---[^>>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<.<<-....>>.>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<-----------~~~~----------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<.<<<<<<--------...---------->>>>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<...-~~~~~~-...>>>-------------....>>.--.]].......
Aab.mS569-2         uuuaguaggu--GCUUUGUGAUGUAGGAUCUCACAUG---UGUGCCUA---------------------------------AAACUGCCAAACUCCGGGGACACCCUAAAGCUUCUGGUACCAAACUAUAUUC-GAAAGACUAUAUGUGGCUGAACUAAUUACUCAG-GUAUGGUAAUAAGUCAGAAGAUAAUC----------GAAA---------GAGCAAUGGGUUAUCGCGGAUCUAAACCAAUAGCA-----------(71)-----------UGUUAUUGUAAAAGAGCAACGAGUAGACGGUAGUUACAUAGGUAAAUUU--------UCU----------AGGUUUCCUAUGUUAAGGUGUAC-UCUAAUGGGUUUCGAGAGAAAUUAUCAAAUCAGA-(1019)-ACGGAU-------------UGCCAUG--uuaaagggua
                    .....<<<<<--<<.......................---[^>>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<.<<-....>>.>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<-----------~~~~----------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<.<<<<<<--------...---------->>>>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<...-~~~~~~-...>>>-------------....>>.--.]].......
Aab.mS569-3         uuuaguaggu--GCUUUGUGAUGUAGGAUCUCACAUG---UGUGCCUA---------------------------------AAACUGCCAAACUCCGGGGACACCCUAAAGCUUCUGGUACCAAACUAUAUUC-GAAAGACUAUAUGUGGCUGAACUAAUUACUCAG-GUAUGGUAAUAAGUCAGAAGAUAAUC----------GAAA---------GAGCAAUGGGUUAUCGCGGAUCUAAAUCAAUAGCA-----------(71)-----------UGUUAUUGUAAAAGAGCAACGAGUAGACGGUAGUUACAUAGGUAAAUCU--------UCU----------AGGUUUCCUAUGUUAAGGUGUAC-UCUAAUGGGUUUCGAGAGAAAUUAUCAAAUCAGA-(1019)-ACGGAU-------------UGCCAUG--uuaaagggua
                    .....<<<<<--<<.......................---[^>>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<.<<-....>>.>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<-----------~~~~----------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<.<<<<<<--------...---------->>>>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<...-~~~~~~-...>>>-------------....>>.--.]].......
Aab.mS569-4         uuuaguaggu--GCUUUGUGAUGUAGGAUCUCACAUG---UGUGCCUA---------------------------------AAACUGCCAAACUCCGGGGACACCCUAAAGCUUCUGGUACCAAACUAUAUUC-GAAAGACUAUAUGUGGCUGAACUAAUUACUCAG-GUAUGGUAAUAAGUCAGAAGAUAAUC----------GAAA---------GAGCAAUGGGUUAUCGCGGAUCUAAAUCAAUAGCA-----------(71)-----------UGUUAUUGUAAAAGAGCAACGAGUAGACGGUAGUUACAUAGGUAAAUCU--------UCU----------AGGUUUCCUAUGUUAAGGUGUAC-UCUAAUGGGUUUCGAGAGAAAUUAUCAAAUCAGA-(1019)-ACGGAU-------------UGCCAUG--uuaaagggua
                    .....<<<<<--<<.......................---[^>>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<.<<-....>>.>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<-----------~~~~----------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<.<<<<<<--------...---------->>>>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<...-~~~~~~-...>>>-------------....>>.--.]].......
Csp.mS569           uuaauugggu--GCUUUGUGAGGUAGGAUUUCACUUG---UGUGCCGU---------------------------------AAACCAUCAAACACCGGGGACCUCCUAAAGCUUAUGCUAUUAAACCUUAUAC-GAAAGUGUAAGAGUGGCUGAACUAAUUAUUCAG-GUAAAGAAAUAAGUCAUAAGAUGAUU----------GAAA---------AUGAAAUGGAAUAUCGCGGAUCUAAAUCAGUAAUA-----CAAAAGGUUAAUAA-------UAUUACUGUAAAAGAGCAACGAGUAGACGGUGGUUACAUUAA--------------GAAA----------------UUAAUGUUAAGGUGUAC-UCUAAUGGAUUUCGAAAGAAAUUAUCAGGGCAGA-(1017)-ACGAUA--------------GCCGUG--uuaaagggua
                    .......<<<--<<.......................---[^>>>>..---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<<.<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>....>.>.>>>>>>......----------....---------.......>>>...>>.>>>><<<....<<<<<<<<-----..............------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<--------------....---------------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>...........-~~~~~~-......--------------...>>.--.]].......
Cka.mS569           uuaauuaggu--GCUUUGUGAAGUAGGAUCUCACAUG---UGUGCCUC---------------------------------AAACCAUCAAACUCCGGGGACUCCCUAAAGCUUUUGGGACCAAGCCUUAUAU-GAAAAUAUAUAGGUGGCUGAAUUAAUUACUCAG-GUACGGUAACAAGCCAAAAGAUGAUC----------GAAA---------GUGAAAUGGGUUAUCGCGGAUCUAAAUCAAUAAUA---AAGGUACAGCCAAGGCAAAA---UAUUAUUGUAAAAGAGCAACGAGUAGACGGUGGUUACAUUAA-------------UAAUAGU--------------UUAAUGUUAAGGUGUAC-UCUAAUGGACCUUGAAAGAGGUUAUCAAAGCAGA-(1022)-GUGAUA--------------GCCAUG--uuaaagggua
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<.<<<...<<<<<<<<-....>>>>>.>>>...<<<<.........>>>>-....>>>......>>>>>>>......----------....---------.......>>>...>>.>>>><<<....<<<<<<<<---....................--->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<-------------.......-------------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>...........-~~~~~~-......--------------...>>.--.]].......
Ssc.mS569           ------------GCUUUGUGGUGUAGGAUCUCACAUA---UGUGCCUA---------------------------------AAACUACCAAACUCCGGGGACAUCCUAAAGCUUCUGAUACCAAGCUUUAGUC-GAAAGGCUAUACGUGGCUGAAGUAAUUACUCAG-(40)GGUAACAAGUCAGAAGAUGAUC----------GAAA---------GAGAAAUGGAUUAUCGCGGAUCUAAAUCAGUAAUA---------CCCCAAAA---------UAUUACUGUAAAAGAGCAACGAGUAGACGGUAGUUGAUGCAUUAAGCCU---GUCCCUAAAAACA---AGGAAUUAAUGUGUUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAAAUCAGA-(1019)-GCUGAU-------------UGCCGUG------------
                    ------------<<.......................---.>>.....---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<<<<<....<.<<<<<-....>>>>>.>.....<<<<.........>>>>-~~~~>>>....>.>>>>>>>....<<----------....--------->>.....>>>...>>.>>>><<<....<<<<<<<<---------........--------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<.<<<---.............--->>>..>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<.-~~~~~~-.>>>>>-------------...>>..------------
Cca.mS1210          aucauggccu--GCUGGAUGAUGUAGGAAGUCAUCUG---CGUGGGUA---------------------------------AAACUAUCAAACUCCGGGGACAUCCUAAAGAUUUUGAUACUAAGCUAUGGUU-GAAAAAUCAUAAGUGGCUGAACUAAUUACUCAG-GUAUAGUAACAAGUCAAAAUAUGAAC----------UAAA---------GUGAAAUGGAUUAUCGCGGAUCUAAGUCAGUAAUA---------UUUAAAAA---------UAUUGCUGUAAAAGAGCAACGAGUAGACGGUAGUUGAUACAUUAAA----------GAUAA-----------UUUGAUGUGUUUAAGGUGUAC-UCUAAUGGGUUUCGAAAGAAAUUAUCAAGUCAAA--(999)-UUUGAU-------------CGCUAUG--ugauauugug
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<---------........--------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<<----------.....----------->>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<--~~~~~->>>>>>-------------....>>.--]]........
Cso.mS1210          ucauggcccu--GCUGAAUGAUUUAGGAAAUCAUUAU---CGUGGGAU---------------------------------AAACUAUCAAACUCCGGGAACACCCUAAAGUUUCUGGUACUAAGCCUUAUAU-GAAAAUAUAUGAGUGGCUGAAGCAAUUACUCAU-GUACAGUAACAAGCCAGAAAAUGAGU----------GAAA---------ACGGAAUGGGUUAUCGCGGAUCUAAGUCAAUAAAU---------AUUAAUAC---------UUUAUUUGUAAAAGAGCAACGAGUAGAUGGUAGUUACGUUAA--------------UAAC----------------UUAGCGUUAAGGUAUAC-UCUAACGAGUUUCGAAAGAAAUUCUCAAGUCAAA-(1011)-UUUGAU-------------CGC--UG--ugaauauugu
                    .......<<<--<<.......................---[^>>>>..---------------------------------.<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<....<.<<<<<-....>>>>>.>......<<<.........>>>.-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<.<<<<---------........--------->>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<--------------....---------------->>>>>>>.......]]]-]]].<..<<<<<<....>>>>>>.....<<<<<<-~~~~~~->>>>>>-------------...-->.--]]........
Cje.mS1210          aucauggccu--GCUGGAUGAUGUAGGAAGUCAUCUG---CGUGGGUA---------------------------------AAACUAUCAAACUCCGGGGACAUCCUAAAGAUUUUGAUACUAAGCUAUGGUU-GAAAAAUCAUAAGUGGCUGAACUAAUUACUCAG-GUAUAGUAACAAGUCAAAAUAUGAAC----------GAAA---------GUGAAAUGGAUUAUCGCGGAUCUAAGUCAGUAAUA---------UCUAACAA---------UAUUGCUGUAAAAGAGCAACGAGUAGACGGUAGUUGAUACAUUAAA----------GAUAA-----------UUUAAUGUGUUUAAGGUGUAC-UCUAAUGGGUUUCGAAAGAAAUUAUCAAGUCAAA-(1021)-UUUGAU-------------CGCUAUG--ugauauugug
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<---------........--------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<<----------.....----------->>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<-~~~~~~->>>>>>-------------....>>.--]]........
Che.mS1210          aucauggccu--GCUUGAUGAUGUAGGAAGUCAUCUG---UGUGGGUA---------------------------------AAACUAUCAAAUUCCGGGGACAUCCAAAAAAUUUUGAUACUAAACUAUAAUC-GAAAGAUUAUAUGUGGCUGAAUUAAUUCUUCAG-GUGUAGUAACAAGUCAAAAUAAGAAU----------GAAA---------AUGAAAUGGAUUAUCGCGGAUCUAAGUCAGCAAUA---------CGUAAUAG---------UAUUACUGUAAAAGAGCAACGAGUAGAUGGUAGUUGAUACAUUAAA----------AAUAA-----------CUUAAUGUGUUUAAGGUGUAC-UCUAAUAAAUUUCGAAAGAAAUUCUCAAGUCAAA-(1048)-UUUGAU-------------CGCUAUG--ugauauugug
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<.<<<<---------........--------->>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<<<<.----------.....-----------.>>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<-~~~~~~->>>>>>-------------....>>.--]]........
Cpa.mS1210          aucauggccu--GCUGGAUGAUUUAGGAAAUCAUCUA---UGUGGGUG---------------------------------AGACUAUCAAACUCCGGGGACAUCCUAAAACUUUUGGUACCAAGCCUUAUGU-GAAAAUAUAUUGGUGGGUGGAGUCAUUAUCCAU-GUACGGUAAUAAUCCAAAAGAUAAUC----------GAAA---------GAGCAAUGGAUUAUCGCGGAUCUAAAUCAAUUAUAAAUUUUAUACCCACAAGCCAAAAUUUUAUAGUUGUAAAAGAGCAACGAGUAGACGGUAGUUGAUGCAGUAA-----------UAAU-------------UUAUUGCGUUUAAGGUGUAU-UCUAAUGGGUUUCGAAAGAAAUUAUCAAGUCAAA-(1010)-UUUGAU-------------CGCUAUG--uaauauugug
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<<<<<<.............>>>>.>>>>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<-----------....------------->>>>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<-~~~~~~->>>>>>-------------....>>.--]]........
Cso.mS1224          ----ugggcu--GAUAUGUGUUUAGGGAAAACACUAA---AUUGGCUA---------------------------------AAACUAUCAAAUUCCGGGGACUUCCUAAAGAUUUUGAUACUAAGCUAUAAUU-GAAAAAUUAUAAGUGGCUGAACUAAUUCUUCAG-AUAGAGUAACAAGUCAAAAUAUGAAC----------GAAA---------GUAAAAUGGAAUAUCGCGGAUCUAAAUCAGCA------------AUAUGUAA------------UGCUGUAAAAGAGCAACGAGUAGACGGUAGUUGACUUCU------AUAUAAUAUAGCUGAACCUAAA------AGAAGUUUAAGGUGUAC-UCUAAUGGGUUCCGAAAGGAACUAUCAAAUCAAA-(1029)-UUUGAUU------------AUCCAUG--auagacgugc
                    ----..<<<<--<<<......................--->^^>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<------------........------------>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<------......................------>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>....<<<<<<<-~~~~~~->>>>>>>------------....>>.--].].......
Aae.mS1224          gaacugggcu--GAUAAGUGCCUUAGGAAAGCACGAAU---UUGGCUUA---------------------------------AACUGUCAAACUCCGGGGACACCUUAAAGCUUAUGAUACCAAGCUAUAUUC-GAAAGGGUAUAAGUGGCUGAACUAAUCCUUCAG-GUAAGGUAAUAAGUCAUAAGAUGAGC----------GAAA---------GUGAAAUAGGUUAUCGCGGAUCUAAAUCAAAAUAUUUAUU------(25)------AAUAAAUGUUUUGUAAAAGAGCAACGAGCAGACGGCAGUUGGUUUUU--------------UAAU----------------AAAAACUUAGGUGCUGCCUCUAAUGGGUUU-GAA-GAAACUAUCAACCUAGAU(1042)AUCUAAUU----UCCAUGAUAGACGUG--cugcaaaaac
                    ....<<<<<<--<<........................--->>>>>>>>---------------------------------<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<<<<<------~~~~------>>>>>>>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<--------------....---------------->>>>>>>.......]]].]]].<..<<<<<-...-.>>>>>.......<<<<<~~~~~~>>>>>...----.............>.--..........
Cso.mS1247          acauaugccu--GCUUAUUGAUCUAGGGUAUCAAGUG---UGCGGGAU---------------------------------AAACUAUCAAAUUCCGGAAACACCUUAAAGCUUCUGAUACCCGGCCAUAUCC-GAAAGUAUAUUGGUGGCUGAAUUAACUACUCAG-GUAAGGUAAUAAAUCAGAAGAUGAUC----------GAAA---------GAGAAAUAGGUAAUCGCGGAUCUAAGUCAAUUAUAGGUUU------(22)------AAACUUCUAAUUGUAAAAGAGCAACGAGUAGACGGUAGUUAUACUAA--------------GAAU----------------UUAGUAUUAAGGUAUAC-UCUAAUGGGUUCCGAAAGGAAUUCUCGAAACAAA-(1045)-UUUGAU------------AUGCCGUG--agacaaagag
                    .......<<<--<<.......................---[^>>>>..---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<....<<<<<<<-....>>>>>>>.....<<<<.........>>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<.<<<<<<------~~~~------>>>>>>.>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<--------------....---------------->>>>>>>.......]]]-]]].<<<<<<<<<....>>>>>>>......<<<<-~~~~~~->>>>..------------.....>>.--...]].....
Slu.mL1685          aaauuauccu--GCCUUGUGCUUUGGGAAAGUACAUAG---AUGGGUC---------------------------------AAACUAUCAAACUCCGGGGACACCCUAAAGCUUAUGAUACCAAACUAUAAUC-GAAAGAUUAUAAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAAUAAGUCAUAAGAUAGAU----------GAAA---------AUCAAAUGGGCUAUCGCGGAUCUAAAUCAAAAUUU--------AUUACACAAAC-------AAAUUUUGUAAAAGAGCAACGAGUAGACGGUAGUUGGAGCAU----------AGCUAAAAAUAAACAC--------AUGCUCUUAAGGUGUAC-UCUAAUGGGUUUCGAAAGAAAUUAUCCAAUCAAA--(287)-UUUGAU-------------AGCCAUG--cuaaaguucg
                    .......<<<--<.........................---[>>>>..---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>...<<<----------....--------->>>....>>>>..>>.>>>><<<....<<<<<<<<--------...........------->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<----------................-------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<--~~~~~->>>>>>-------------....>>.--.]........
Apa.mL1931          augcgaaggu--GCCUUGUGAUUUAGGACAUCAC---UUUUGUGCCUA---------------------------------AAACUAUCAAAUUCCGGGGACCUCCUAAAGCUUUUGGUACCAAGCUCUAGUC-GAAAGGCUAGAAGUGGAUGAUCUAAUCAAUCAU-GUAUGGUAACAACCCAAAAGAUAAUC----------GAAA---------GAGCAAUGGAAUAUCGCGGAUCUAAGUCAGUAU--------------UAU-------------AUACUGUAAAAGAGCAACGAGUAGACGGUAGUUGACAAGG------------AGAUGAGCGC------------CCUUGUUUAAGGUAUAC-UCUAAUGGAUUUCGAAAGAAAUUAUCAACUCAGA--(989)-UCUGA-------------UUGCCGUG--agcgaaauuc
                    ......<<<<--<<....................---[[[[^^>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<--------------...------------->>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<------------..........------------>>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>......<<<<<--~~~~~->>>>>-------------.....>>.--.]]]]]]...
Slu.mL1949-3        aaauuggcca--GCUAAGUGUUCUGGGAA-AACACU---AUUGUGGGCC--------------------------------CAACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGUCUAUGAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGAGU----------GAAA---------ACGAAAUGGAUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUUUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGG-------------AUUUUAC--------------CCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAACUCAAA--(278)-UUUGA------------AUAGCCGUG--uuaaaugugg
                    .....<<<<<--.................-......---.[[.>>>.>>--------------------------------.<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<-------------.......-------------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>......<<<<<--~~~~~->>>>>------------......>>.--..]]......
Slu.mL1949-2        ---------------------------------------AUUGUGGGCC---------------------------------AACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGUCUAUGAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGAGU----------GAAA---------ACGAAAUGGAUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUUUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGG-------------AUUUUAC--------------CCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAACUCAAA--(266)---------------------------------------
                    ---------------------------------------..........---------------------------------<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<-------------.......-------------->>>>>>>.......]]]-]]]....<<<<<<....>>>>>>...........--.....---------------------------------------
Slu.mL1949-1        ---------------------------------------AUUGUGGGCC---------------------------------AACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGUCUAUGAGUGGCCAGAAUGAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGAGU----------GAAA---------ACGAAAUGGAUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUUUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGG-------------AUUGUAC--------------CCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAACUCAAA--(266)---------------------------------------
                    ---------------------------------------..........---------------------------------<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<-------------.......-------------->>>>>>>.......]]]-]]]....<<<<<<....>>>>>>...........--.....---------------------------------------
Spu.mL1949          aaauuggcca--GCUAAGUAUUCUGGGAACAACACU---AUUGUGGGCC--------------------------------CAACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGGCUAUGAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGACU----------GAAA---------ACGAAAUGGGUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUUUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGG-------------AUUUUUU--------------CCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAAAUCAAA--(999)-UUUGA------------AAUGCCGUG--aaauuggcca
                    .....<<<<<--........................---[[[.>>>.>>--------------------------------.<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>......----------....---------.......>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<-------------.......-------------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>......<<<<<--~~~~~->>>>>------------......>>.--.]]]......
Svi.mL1949-1        ---------------------------------------AUUGUGGGCC---------------------------------AACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGGCUAUGAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGAGU----------GAAA---------ACGAAAUGGAUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUCUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGGA-------UUUUUAUUUUU--------------UCCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAAAUCAAA--(260)---------------------------------------
                    ---------------------------------------..........---------------------------------<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<<-------...........-------------->>>>>>>>.......]]]-]]]....<<<<<<....>>>>>>...........--.....---------------------------------------
Svi.mL1949-2        ---------------------------------------AUUGUGGGCC---------------------------------AACUAUCAAACUCCGGGGACAUCCUAAAGUUUAUGAUACCAAGCCAUAGUC-GAAAGGCUAUGAGUGGCCAGAAUAAUUACCUGG-GUAUGGUAACAAGUCAUAAGAUGAGU----------GAAA---------ACGAAAUGGAUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUCUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGGA-------UUUUUAUUUUU--------------UCCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAAAUCAAA--(260)---------------------------------------
                    ---------------------------------------..........---------------------------------<<<<<<<<...<<<<<<...<<<<.....<<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<<-------...........-------------->>>>>>>>.......]]]-]]]....<<<<<<....>>>>>>...........--.....---------------------------------------
Sgr.mL1949          ---------------------------------------AUUGAGGGCC---------------------------------ACCUAUCAAACUCCGGGGACACCCUAAAGCUUAUGAUACCAAGCCAUAGUC-GAAAGGCUAUGAGUGGCCAGAAUAAUUCCCUGG-GUAUGGUAACAAGUCAUAAUAUGAGU----------GAAA---------ACGAAAUGGGUUAUCGCGGAUCUAAAUCAGAAUUUC-----AAAGCCCACAGCCAAAA-GAAAUAUCUGUAAAAGAGCAACGAGUAGAUGGUAGUUAUUUUGGA-------------UUUUAC--------------CCAAAAUUAAGGUGUAC-UCUAAUGGGCUUCGAAAGAAGUUAUCAAAUCAAA--(260)---------------------------------------
                    ---------------------------------------..........---------------------------------<<<<<<<<...<<<<<<...<<<<......<<<<<<<<<<<...<<<<<<<-....>>>>>>>.....<<<<.........>>>>-...>>>>....>.>>>>>>.....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<<<<-----.................->>>>>>.>>>....>>>...[.[[[[[..>>>>>>>><<<<<<<.-------------......-------------->>>>>>>.......]]]-]]]....<<<<<<....>>>>>>...........--.....---------------------------------------
Sce.m.COX1,5a       ucucaugauu--AAU-------(41)-------------AGUUGAUCAGAAAUUAUCAAAAAA(886)UUUUUUGAUAUAUAUAGAGGCAAACUCGAGGAAAACCAUAUAAUUA---------------------------------------GAAUAAGUAA-----------------------------------------------------UAAUUAUAUGACAACCGUCGAACUAAAUCAUAUUCAA----------GAAA-----------UUAAUAUGUAAAAGCGUAGAGAUUAGACGCCUCUGGUUAUCUAAGUAAUAUAU----AUAU----AUAUAUUAUAUGAUAACAUAAGGUAUAA-UCCAAUGAGAUCAGUAAUGAUUU-----UAAAACA-(178)UGUUUUA------AAGUUAAAUAAAAG--agcucuaauc
                    .....<<<<<--<<<-------~~~~-------------[^^^>>>>>.....<<<<<<<<<<~~~~~>>>>>>>>>>....<<<<<<<....<<<<<<.....<<<<<<<<<<---------------------------------------..........----------------------------------------------------->>>>>>>>>>....>>.>>>>.<<....<<<<<<.<<----------....----------->>>>>>>>....>>....[.[[[[[...>>>>>>><<<<<<...<<<<<<<<<----....---->>>>>>>>>..>>>>>>........]]]-]]]..<.<<<<<<....>>>>>>-----<<<<<<<-~~~~~>>>>>>>------............>.--]]]]......
Pan.m.COX1,5        uuacccuccu--GCCAAGUGAUUUAGGGAAUCACUAU---UGUGGGAA---------------------------------AAACUAUCAAAUUCUGGGGAAGCCCUAAAGCUUUUGAUACCAAACCUGGUAU-GAAAAUACGGAGGUGGAAGAAGUAAUGACUCUU-AUAUGGUGACAAGUCAAAAGAUGAUU----------GAAA---------AAAAAAUGGGUAAUCGCGGAUCUAAAUCAGCAUU-----------AAAUAAA----------AAUACUGUAAAAGAGCAACGAGUAGACGGUAGUUGCAUAAACUCUUUUUUAGUUAAAAAAUUUAUAAAAAAGGGUUUCAUGUUAAGGUGUAC-UCUAAUGGGUUCCGAAAGGAAUUAUCAAGUCAAA-(1179)UUUGAU--------------CGCCAUG--uuaucaggug
                    ......<<<<--<<.......................---[^>>>>>.---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<.<<<<.<<<<-....>>>>..>>>>..<<<<.........>>>>-...>>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<.<<<-----------.......---------->>>.>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<<<<<<<<.............>>>>>>>>>>>>>.>>>>.......]]]-]]].<<.<<<<<<....>>>>>>.....<<<<<<-~~~~~~>>>>>>--------------....>>.--.]].......
Pan.m.ND1,2         aguaauaccu--UAU---------------------GUCCAUAGGGUU---------------------------------AUAUAGUCAAACUACGGGGAACUCCUAAAGCUUAUAGUACUAAACUAGGUAC-GAAAGUACUUAAGUGGCUGAAGUAAUUAUUCGG-GUAUAGUAAUAAGUUAUAAGAUGAUCAGAGGGGGGCGCAAGCUCGCUCUGAGAAAUGGACAAUCGCGUAUCUAAGUCAGUAUUA-------AGAGAGCUCGCGCCUA---UAAUACUGUAAAAGAGCAACGAGCAGACGGCUAUAGGUAUUUAUAAU----------AUU-----------AUUGUAAAUAUUUAAGGUGUGC-UCUAUAAGCUUA-GAAAUAAGUU-----AUCGUA-AAUUG-UAUGGUAAAA(2305)UUUUAUAUAAG--uauggaccua
                    ......<<<<--<<<---------------------[[[[^^^>>>>.---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<<<<<<.<<<<<<<<<-....>>>>>>.>>>..<<<<.........>>>>-...>>>>....>.>>>>>>>....<<<<<<.<<<.<....>>>>.>>>>>>.....>>>...>>.>>>><<<....<<<<<<<<-------................--->>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<<<----------...----------->>>>>>>>>>>>.......]]]-]]].<.<<<<<<-....>>>>>>-----<<<<<<-.....->>>>>><<<<~~~~~~>>>>.....>.--]]]]]]]...
Pan.m.ND3,1         ucauaauccu--AAAAAUUGAACAGGGAAAUCAAUUA---AUUGGGUA---------------------------------AAACUAUCAAAUUCCGGGAAAACCUUAAAGCUUCUGAUACUAAGCAUUAAUC-GAAAGGUUAAUUGUGGCUGAAGUAAUUACUCAG-GUAUAGUAAUAAGUCAGAAGAUAUAC----------GAAA---------GUAUAAUAGGCAACCGCGGAUCUAAGUCAG---------------CUUUAUUGU------------CUGUAAAAGAGCAACGAGUAUACGGUAGUUGUACUAA---------------UAAU---------------UUAGUAUUAAGAUGUAC-UCUAGUGGGCUUAGAAAUAAGUUAUCAGGCUAAA--(979)UUUAGCUU--------------AAACG--uaucaagaga
                    .......<<<--<<.......................---[^>>>>..---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<<<<<<.<<<<<<<<<-....>>>>>>.>>>..<<<<.........>>>>-...>>>>....>.>>>>>>>.<<<<<----------....--------->>>>>..>>>...>>.>>>><<<....<<<---------------.........------------>>>....>>>...[.[[[[[...>>>>>>><<<<<<<---------------....--------------->>>>>>>.......]]]-]]].<<.<<<<<<....>>>>>>...<<<<<<<<--~~~~~>>>>>>>>--------------..>>.--.]].......
Pan.m.ND4,1         uuauauacau--UUAA---------------------CCUAAAGUGUA---------------------------------AAAGAGCCAAAUACCGGGGAAGCCCUAAAGCUCUAGUAACCAAGGUUCAACACGAAAGUGUUGAACUGGCCUGAUUAAUGACUCAGGGUAUGGUAAAAUCACUAGUAG-----------------------------AUAUAUGGGUAAUCGCGGUUCUAAGUCAUCCCUGCUUA----CGUACUGAAUC-UAAGCAAGAAGGUGUAAAAGAGCAACGAGUAGACGGUUCUUCGAGUUCUAG------------AAAU------------UUAGAAUUCGUAAGGUGUAC-UCUAGUC-GCUGGGAAACCAGU-----UUUAGGG-(1085)CUCUAAA--------(24)CAACAACG--uguuaggauc
                    .....<<<<<--<<..---------------------[[[[^^>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<<.<<<<<<<<<<....>>>>>>>>>>..<<<<<........>>>>>...>>>>....>.>>>>>.>>-----------------------------......>>>>..>>.>>>><<<....<<<<.<<<<<<<----...........->>>>>.>>..>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<------------....------------>>>>>>>>>>.......]]]-]]].<<.-<<<<<....>>>>>-----<<<<<<<-~~~~~~>>>>>>>--------~~~~.....>>.--].]]]]]...
Ncr.m.ND5,1         ccaugauccu--CGGGGUCGCGUUAGGGGAAAACGCGUCUAUGGGGAU---------------------------------AAACUGUCAAAUUCCGGGGAAGUCCUAAAGCUUAAGGUACCAAGCUGUAGUU-GAAAAACUAUGAGUGGCUGAAGUAAUUACUCAG-GUACGGUAACAAGCCUUAAGAUGAGU----------GAAA---------ACAAAAUGGAUAAUCGCGGAUCUAAGUCAGUAGUAAU-------CGAUAGUA--------AUUCUACUGUAAAAGAGCAACGAGUAGACGGCAGUUGAUCCAUAAA-----------GUCACA----------UUUAAUGGAUUUAAGAUGUAC-UCUAAGGGGUUUCGAAAGAAAC-(45)-GCUAAA-(1053)UUUAGC--------------UUAAAAG--cauaaccaaa
                    .....<<<<<--<<.........................[[^^>>>>>---------------------------------.<<<<<<<....<<<<<<...<<<<.....<<<<<<<<<<<..<<<<<<<<<-....>>>>>>.>>>..<<<...........>>>-....>>>....>.>>>>>>>....<<----------....--------->>.....>>>>..>>.>>>><<<....<<<<<<.<<<-------........-------->>>>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<<<-----------......---------->>>.>>>>>>>.......]]]-]]].....<<<<<....>>>>>-~~~~-<<<<<<-~~~~~~>>>>>>--------------.......--]]]]......
Pan.m.ND5,2         uagugauccu--CGAGGUAGCGUGGAGGGAAUACGCUUCUAUGGGGGU---------------------------------AAACUGUCAAAUUCCGGGGAACUCCUAAAGCUUAAGGUACCAAGCUGUAUUU-GAAAAAUUAUCAGUGGCUGAGGUAAUUGCUCAG-GUAUGGUAACAAGCCUUAAGAUAUGU----------GAAA---------ACAAAAUGGACAAUCGCGGAUCUAAGUCAACAAAACU---------AAA---------AGUUAAUGUUGUAAAAGAGCAACGAGUAAACGGCAGUUGAUCAGCUAAGU----------CUA-----------ACUUAACUAAUUUAAGAUGUAC-UCUAACAGGUUUUGAAAAGAAUC(46)UGUUAAA-(1099)UUUAACA----------------AAAG--cauaaucaaa
                    .....<<<<<--<<.........................[[^^>>>>>---------------------------------.<<<<<<<....<<<<<<....<<<.....<<<<<<<<<<<<.<<<<<<.<<-....>>.>>.>>>>..<<<<<.......>>>>>-...>>>>....>.>>>>>>>...<<<----------....--------->>>....>>>...>>.>>>><<<....<<<<<.<<<<---------...--------->>>>..>>>>>....>>>...[.[[[[[...>>>>>>><<<.<<.<<<<<----------...----------->>>>>.>>.>>>.......]]]-]]]....<<<<<<....>>>>>>~~~~<<<<<<<-~~~~~~>>>>>>>----------------....--]]]]......
Pan.m.A6,1          cugcaaacau--AAAAAAAUGAGAUUAGGUGCCUCACUUUGUUGUGUU---------------------------------AAAGAGCCAAACUCCAAGGAAGCCCUAAAGCUCUAAUAACUAAAGAUAAGACGGAAACUUCUUACCUGGCCUCAUUAAUGAUUGAGGGUAUAGUAAUAUAAUUAGAGAUUCUA----------GUAA---------UAGAAAUGGGUGAUCGUGGAUCUAAAUCAGUAAUAUU---------UUA---------AAAGAUUAUUGUAAAAGAGCAACGAGUAGACGGUUCUUCCAUUAGU--------------UUAA--------------ACUAAUGGUAAGGUGUAC-UCUAGUCGCCAGGAAAGCUGGUUCUUAGGAGAAACUAAGUAA--CCUAAGA------(1379)GAACG--acuuucaggu
                    .....<<<<<--<<.<<<...................>>>.>^>>>>>---------------------------------.<<<<<<<....<<<<.<<..<<<<.....<<<<<<<<<<<<.<<.<<<<<.<....>.>>>>>.>>..<<<<<........>>>>>...>>>>....>.>>>>>>>.<<<<<----------....--------->>>>>..>>>>..>>.>>>><<<....<<<<<<<.<<---------...--------->>.>.>>>>>>....>>>...[.[[[[[...>>>>>>><<<<<<<<--------------....-------------->>>>>>>>.......]]]-]]].<<.<<<<<.....>>>>><<<<<<<.............-->>>>>>>------~~~~~~..>>.--].........
                          P1                              P10 P1'        P2                   P2'     P3          P4      P5        P5a            P5b           P5b'     P5c          P5c'                P5a'    P5d                      Pd'     P5'       P4'P6      P6a                                  P6a'    P6'     P7         P3'  P8                                          P8'           P7'P9.0 P9        P9'       P9.1         P9.1'                P9.0' P10'