P1 P10 P1' P2 P2' P3 P4 P5 P5a P5b P5b' P5a' P5' P4 P6 P6' P7 P7.1 P7.2 P3' P8 P8' P7' P9.0 P9 P9' P9.1 P9.1' P9.2 P9.2' P9.0' P10'
Cbu.bL1917 -ccguaacuau-AAAUUAA-------CCGUU-GUAGUUACG----------------------------UAAAUAAACUUGGCUAUA---UGCUGGAAACUCCG-----AGUAUCCUCCAGUACUCAUCUCAA------------------------------CUAAAA-----------------------------UUGAGGUAGU-AAAAAUCUGCGAGG---------------UGCGGACAAUCAGCAGGAAAGACUAAUC-------------------UUUUU-------------------------GAUUAGAAUCCUCAGAGACUA--------------------------------------------------AUACGCCGAGCGUACUUAGAA-------------------AAAAUCCA------------------UUCUAAGUGUG-AUGAUAGAGUCCG-AU-CUCUAUA-------GCGA---------UAUAGAG--GGUUUU---------------------CAAAA--------------------GAAACCUGUUAAUCAU--------------UAUCCC-----------------AUGAUUAAC--AUAACG------UCAAUA-aacgguccua
-.<<<<<<<<<-<<.....-------[[[^^->>>>>>>>>----------------------------........<<<<<<....---<<<<<<....<<<<-----.....<<<<<<<<<<<.<<<<<<<------------------------------......----------------------------->>>>>>>>>>-....>.>>>.>>>>---------------..>>>>...>>>>>><<<....<<<<<<-------------------.....------------------------->>>>>>..>>>...[.[[[[[--------------------------------------------------....>>>>>><<<<<<<<<<<-------------------........------------------>>>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<---------------------.....-------------------->>>>>>.<<<<<<<<<--------------......----------------->>>>>>>>>--....].------...>>.-]]]]].....
Tsu.bL1917 gccguaacuau-AAA---------GACCGUU-GUAGUUACGGU----------------------------AAAAAACUCGGCUGUA---UGCGGGAAACUCUGG--------AGUGCCGGUGGG---------------------------------------(21)--------------------------------------------CCCACGGAGU--------GCGAAAGCGCCAGACAACCCGCAGGAAACUCAUCUAAGUUA--------------(475)------------------UAGCUUAGAUGAGGAUCCUCAGAGACCA---------------------------------------------------UACGCCGAGCAUCACAUGGGUU-------------------(25)-------------------GACCCAUGGAUG-AUGAUAUGGUCC--AAUCCUAUG--------GUAA----------CAUAGG----GCCUAAAAUGGG-------------AUAGC--------------CUCAAUUGAGGU-----------------------------------------------------------GAAUG-AAGUAUUAACG-aacgguccua
<<<<<<<<<<<-<<.---------[[[[[^^->>>>>>>>>>>----------------------------......<<<<<<....---<<<<<<....<<<<<--------.<<.<<.<<<<<---------------------------------------~~~~-------------------------------------------->>>>>>>.>>--------.........>>>>>...>>>>>><<<..<<<<<<<<<<<<<--------------~~~~~------------------>>>>>>>>>>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<.<<<<<<<<-------------------~~~~------------------->>>>>>>>>>>>-......]]]]]]--<<<<<<<<<--------....---------->>>>>>----<<<<.<<.<<<<-------------.....-------------->>>>.>>.>>>>-----------------------------------------------------------.....-....>>>....-]]]]]]]...
Cbr.cL1917 -ccguaacuau-AGACUGAA---------UU-GUAGUUAU---------------------------------AAAAUUUAGCUAUG---UGCUGGAAAAUCUC-----(51)--GUUUACUACUCGUUGAUAAC-------AGCUAGACAACAGACAGUUCGCUGUCUUUGAA-AAAGAAAAA--AAAGCU--------ACAACAGU-UACAAAGUGAACAG---------------UAGAGACAAUCAGCAGGAAAGACUUUUAUGAA---------------(478)---------------------UUUGUACAAGAAUCCUCAGAGACUA---------------------------------------------------UACGCUAAACGAAAUAGACGUAA-----------------AAAAUC--------------------UUACAUUUCG-AUGAUAUAGUCCG-AU-CUCUAUG-------GUGA---------CAUAGAG--GCAAAUUAUGUAUGG-------------GCAA--------CCAGCCAUUUUGAUUUGCGCCUAACAUUCUUUUUGAUAACGGUAAGAAUAGUUUAUUCGUUAAGACAUGUUUGG--UUAACA------GAUAUG-aacgguccua
-..<<<<<<<<-<<......---------^^->>>>>>>>---------------------------------....<<<<<<....---<<<<<<....<<<<-----~~~~--<<<<<<<<<<.<<<<.....-------<<<<.............<<<<.......>>>>-.........--..>>>>--------.>>>>>>>-....>.>>>>>>..---------------..>>>>...>>>>>><<<....<<<.<<<<<<---------------~~~~~--------------------->>>>>>.>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<....<<<<-----------------......-------------------->>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<<<..<<<-------------....-------->>>..>>>...>>>>>>>.<<.<<<<<<<<<..<<<.<<<..........>>>...>>>..>>>>.>>>>>.>>--....].------...>>.-]]........
Cgl.mL1917 -ccguaacucu-AAAAU------------UU-GGAGUUGU---------------------------------AAAAUUUAGCUAUG---UGCUGGAAAAUCUU----GUAGAUAAUUUGCUACUCGUUGAUUUU-------AGCCUUCGGUAA----------CUUG------------UUACAGAACGCU--------UCAGCAGU-UAAAAUGUAAAUAG---------------UAAAGACAAUCAGCAGGAAAGACUUUCAUGAAA--------------(473)--------------------UUUUGUGAAAGAAUCCUCAGAGACUA---------------------------------------------------UACGCUAAACUUGUU--------------------------UAUA-------------------------AACAAG-AUGAUAUAGUCCG-AU-CUGUAUG-------GUGA---------CAUACAG--GUUCU-----------------------(63)---------------------AGAAC-CGACAAAAAUUC----------ACCCUACUA-----------GAAUUUUUGAUCG---UAACA------UAAAUG-aacgguccua
-..<<<<<<<<-<....------------[^->>>>>>>>---------------------------------....<<<<<<....---<<<<<<....<<<<----.......<<<<<<<<<<.<<<<<....-------<<<.<<<.<<<<----------....------------>>>>.>>>.>>>-------->>>>>>>>-....>.>>>>>>..---------------..>>>>...>>>>>><<<....<<<<<<<<<<<--------------~~~~~-------------------->>>>>>>>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<--------------------------....------------------------->>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<-----------------------~~~~--------------------->>>>>-<<<<<<<<<<<<----------.........----------->>>>>>>>>.>>>---...].------...>>.-]]........
Slu.mL1923 -cuaugaggau-CAAAA---------UUAGG-GUCCUC---------------------------------UAUAAACUUAGCUAUA---UGCUGGAAACCUU-----(155)-UAAUAAAUAAGUGAUUA---------------------------------AACU-------------------------------UAAUGACUUAAAAUAAUUUAUUA--------UUAGAAAAUAAAGGUAACCAGCAGGGAAAAUUAAAAGUAAAUUUUUAUUAAAUUAAUUAUCUUUUUAAUAGUUUUUUUUAUUUAUUUAAUAUGCCCUCAGAGAUUG---------------------------------------------------CAAGCUAAGCAAUUUUUAUUUUUAUUUU------------AAAUAA-----------AAAAUAUUAAUAUUAAUUG-AUGAUACAAUCCACAA-AUAACUU--AAAAUAUAAUCUA-----AAGUUAU--AACUU-------------------AAAAUAUAAUCUA----------------AAGUU----------------------------------------------------------------------UUUUUG-ccuaagguag
-....<<<<<<-<....---------[[[[^->>>>>>---------------------------------......<<<<<<<...---<<<<<<..<<<<<-----~~~~~-<<<<<<<<<<<<.<<<<---------------------------------....------------------------------->>>>.>>>>.....>.>>>>>>>--------..........>>>>>..>>>>>><<<...<<<<<<<<<<<<...<<<<<<<<...........>>>>>>>>.....>>>>>>..>>>>>>...>>>...[.[[[[[---------------------------------------------------..>>>>>>><<<<<..<<<<..<<<<<<------------......----------->>>>>>..>>>>..>>>>>-......]]]]]]..<<-<<<<<<<--.............----->>>>>>>--<<<<<-------------------.............---------------->>>>>----------------------------------------------------------------------...>>.-]]]]].....
Rsp.mL1923 --uaugaggau-UGAUAAAACC----UACGG-GUCCUCAU---------------------------------UAAACUCGAUGAUA---UGCUGGAACAUCnCUAA---------------------------------AGCUnUAAAUACUUUUUAAUAAUAUUAAUUUAAUAGUAAUAAUUUnAAAGAUGUAA-----------------------------------------CAAUGGACAAUCAGCAGGGAAUAUU---------UACCUUAAUUAUGUGAUACCAUCAUUAAUAUnGUUnn-----------AUAGCCCUCAGAGnCUA---------------------------------------------------GAUAAUCGAGCA-------------------------AAUAAUUCUUA-------------------------UnUGAUGAUAUAGnCCC-AG-CUUUAAUU------GnnA--------GAUUAAnG---------------------------------------------------------------------------------------------------------------------------------GUAAUUG-ncuaagguag
--.<<<<<<<<-<.........----[[.[^->>>>>>>>---------------------------------.....<<<<<<...---<<<<<<...........---------------------------------........................................................-----------------------------------------..........>>>>>><<<......---------.....................................-----------....>>>...[.[[[[[---------------------------------------------------..>.>>>>><<<-------------------------...........------------------------->>>.......]]]]]].-<<-<<<<<<<<------....-------->>>>>>>>---------------------------------------------------------------------------------------------------------------------------------....>>.-]]]]......
Cha_vu.mL1923 -cucuaacugu-CAACU---------UUAGG-GCAGUUA---------------------------------UAAAAUCUGGCUAUA---UGCUGGAACACUCGCAAUU-------CUUA--------------------------------------------(37)------------------------------------------------UAAG------------------UAGAGUAAAUCAGCAGGCUCGCUAGAGGCG---------------CGAAGCGUC-------------------CGUCUCUAUCGAGCCUCAGAGGCCA---------------------------------------------------UACGCCAGACGCA-------------------------CGGAAACAAU------------------------UGUG-AUGAUAUGGUCCA-AU-CCUCAUG-------GUGA---------CAUGAGG-CGCGCGC------------------AAGACAAGAAAGA---------------GCGCGC------------------------------------------------------------AUUG-UUUUCGCUAUG-ccuaagguaa
-...<<<<<<<-<....---------[[[[^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<...<<<<......-------<<<<--------------------------------------------~~~~------------------------------------------------>>>>------------------..>>>>...>>>>>><<<<<<..<<<<<<<---------------.........------------------->>>>>>>..>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<-------------------------..........------------------------>>>>-......]]]]]].-<<-<<<<<<<-------....--------->>>>>>>-.<<<<<<------------------.............--------------->>>>>>------------------------------------------------------------....-........>>.-]]]]].....
Ast.cL1923 -cuaugacagu-UCAAGGAUUUCAA-UUAGG-GCUGUCGU---------------------------------UAAAGAUGACUAUU---UGCUGGAACACCCUCAA-----GGCGCUUAAGACC--------------------------------------GAGUA-------------------------------------GGU-GAAACGUUAAGAGUU-------------AUAGGG-CAAUCAGCAGGAAACUGAACAAUUUUU--------------(750)----------------AAAAAAUUCGAUUAGGAUCCUCAGAGACUA---------------------------------------------------UAUGUCAUCCUUUUCCGUUGAAUCUCAA------------AAGUA---------------UUGACCAACGAAAUUG-AAGAUAUAGUCCA-AU-CUUACAU-------GAGA---------GUGUAAG-CGAAUCUUUUG-----------------AAAAU-----------------CAAAGAUUC-----------------------------------------------------------AAAUA-----CUACCUG-ccuaagguag
-..<<<<<<<<-<<...........-[[[^^->>>>>>>>---------------------------------....<<<<<<....---<<<<<<....<<<<...-----<<<.<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>.>>>-------------..>>>>-...>>>>>><<<..<<<<....<<<<<--------------~~~~~---------------->>>>>......>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><.<<<.<<<<<....<<<<------------.....--------------->>>>.>>>>>>>>..>-......]]]]]][-..-<<<<<<<-------....--------->>>>>>>-.<<<<<<<<.<-----------------.....----------------->>>>>>>>>-----------------------------------------------------------...].-----.......-]]]]].....
Cpa.cL1923 -cuauaacgau-CAACU---------UUAGG-GUCGUU---------------------------------UUAAAAGGCGACUAUA---UGCUGGAACACCCUGAA-----GGCUUUUAAAACC--------------------------------------GAGUA-------------------------------------GGU-GAAAUGUUAAAAGUU-------------AUAGGG-CAAUCAGCAGGAAAUUACAAAUUAAAAAA------------(828)---------------UUUUUUAAUUUUCUAAGAUCCUCAGAGACUA---------------------------------------------------UACGUCGCCCUUUUCUAGC----------------------(39)---------------------GCUAGAAAUG-AUGAUAUAGUCCA-AC-CUUAUGU-------GAGA---------GCAUAAG---------------------------------------------------------------------------------------------------------------------AUUAAUA----AUACCUUG-ccuaaggu--
-....<<<<<<-<....---------[[[[^->>>>>>---------------------------------......<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<..<<<.<<<<<<<<<<<------------~~~~~--------------->>>>>>>>>>>..>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><.<<<<<<<<----------------------~~~~--------------------->>>>>>>>.>-......]]]]]][-<.-<<<<<<<-------....--------->>>>>>>---------------------------------------------------------------------------------------------------------------------.....].----......>.-]]]]]...--
Cmo.cL1923 -cuauaacggu-C----(221)----UUAGG-GCCGUUAUA---------------------------------AAAAGUAACUAUA---UGCUGGAACACCCUCAA-----GAUUAUUAGAACC--------------------------------------GAGUA-------------------------------------GGU-GACAUACUAAUAAUU-------------AUAGGG-CAAUCAGCAGGAAAUAAUUCAAUUAUUAAAAAAA-------(655)----------UUUUUUUAAUUAGUUAAUUAAACUCCUCAGAGACUA---------------------------------------------------CACGUUACUCUAUUUUUUAAAAAG----------------(229)----------------CUUUUAAAAAAAUUG-AAGAUAUAGUCC--AAUCUUAUAU-------GAAA---------AUUUAAGA------------------------------------------------------------------------------------------------------------------------------AUUACCUUG-ccuaagguag
-.<<<<<<<<<-<----~~~~~----[[[[^->>>>>>>>>---------------------------------...<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<..<<<<<.<<<<<<<<<<<<<<-------~~~~~---------->>>>>>>>>.>>>>>>>>>>...>>>...[.[[[[[---------------------------------------------------...>>>>>><.<<<<<<<.<<<<<----------------~~~~~---------------->>>>>.>>>>>>>.>-......]]]]]]--<<<<<<<.<<-------....--------->>.>>>>>------------------------------------------------------------------------------------------------------------------------------......>>.-]]]]].....
Cmu.cL1923 -cuauaacggu-U-----(56)----UUAGG-GCCGUUA---------------------------------AAAAAGAUAACCAUA---UGCUGGAACCUCCUGAA-----GGCUAUUAGGACC--------------------------------------GAGUA-------------------------------------GGU-AAAACACUAAUAGUU-------------AUAGGA-CAAUCAGCAGGAAACUGU-----------------------(769)---------------------------ACAGGUUCCUCAGAGACUA---------------------------------------------------AACGUUAUCCUUUAUGCUUAA--------------------(14)-------------------UUAAGCGUAUUG-AAGAUAUAGUCC--AACCACUUAU-------GAGA---------GUAAGUG------------------------------------------------------------------------------------------------------------------------------ACUGCCUUUG-ccuaagguag
-...<<<<<<<-<-----~~~~----[[[[^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<<.<<<<-----------------------~~~~~--------------------------->>>>.>>>>...[.[[[[[---------------------------------------------------...>>>>>><..<<<<<<<<<--------------------~~~~------------------->>>>>>>>>..>-......]]]]]]--<<.<<<<<<<-------....--------->>>>>>>------------------------------------------------------------------------------------------------------------------------------.......>>.-]]]]].....
Ceu.cL1923 -cuauaacggu-U-----(44)----UUAGG-GCCGUUA---------------------------------AAAAAGAUGACCAUA---UGCUGGAACAACCUCAA-----GGCUAUUAGGACC--------------------------------------GAGUA-------------------------------------GGU-GACACGCUAAUAGUU-------------AUAGGU-CAAUCAGCAAGAAACUACU----------------------(671)--------------------------AGUAGGUUCCUCAGAGACUA---------------------------------------------------CACGUCAUCCUAUUUAAACA---------------------(32)--------------------UGUUUAAAUCG-AAGAUAUAGUCCG-CU-CUUACA-------CAUAAU---------UGUAAG----------------------------------------------------------------------------------------------------------------------CUAACAUUUACCUUAUUG-ccuaagguag
-...<<<<<<<-<-----~~~~----[[[[^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>>.<<<.<<<<<----------------------~~~~~-------------------------->>>>>.>>>....[.[[[[[---------------------------------------------------...>>>>>><.<<<<<<<<<---------------------~~~~-------------------->>>>>>>>>.>-......]]]]]][-..-<<<<<<-------......--------->>>>>>----------------------------------------------------------------------------------------------------------------------....].............-]]]]].....
Clu.cL1923 -cuaugacggu-U-----(48)----UUAGG-GCCGUC---------------------------------UCUAAAGAUGACCGUA---UGCUGGAACACCCUGAA-----GACUAUUUGGACU--------------------------------------GAGUA-------------------------------------AGU-GAUACGCGAAUAGUU-------------AUAGGG-CAAUCAGCAGGAAACUAUUAUUUU-----------------(677)---------------------AAAAAAAUAGGAUCCUCAGAGACUA---------------------------------------------------UACGUCAUCCUGUUUAGACAUU-------------------(17)------------------AAUGUCUAAAUUG-AAGAUAGAGUCC--AAUCUUACAU-------GAGA---------GUGUAAG--------------------------------------------------------------------------------------------------------------------CAUCAACU-----ACCAUUG-ccuaagguag
-....<<<<<<-<-----~~~~----[[[[^->>>>>>---------------------------------......<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<..<<<<<.<<<<-----------------~~~~~--------------------->>>>.>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><.<<<<<<<<<<<-------------------~~~~------------------>>>>>>>>>>>.>-.......]]]]]--<<.<<<<<<<-------....--------->>>>>>>--------------------------------------------------------------------------------------------------------------------........-----....>>.-]]]]].....
Cel.cL1923 -cuauaacggu-U-----(62)----UUAGG-GCCGUUGUA---------------------------------AAAGAUGACCAUU---UGCUGGAACAUCCUGAA-----GGCUAGAGGGACC--------------------------------------GAGUA-------------------------------------GGU-GAAACGCUUCUAGUU-------------AUAGGA-CAAUCAGCAGGAAACUACU----------------------(794)--------------------------AGUAGGCUCCUCAGAGACUA---------------------------------------------------AACGUCAUCCUGUUUAGAUA---------------------(27)---------------------UAUCUAACUG-AAGUUAUAGUCC--AAUCUCCCAG-------GUAA---------CUGGGAG------------------------------------------------------------------------------------------------------------------------------UCAAACUUUG-ccuaagguag
-.<<<<<<<<<-<-----~~~~----[[[[^->>>>>>>>>---------------------------------...<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<..<<<<<----------------------~~~~~-------------------------->>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><.<<<..<<<<---------------------~~~~--------------------->>>>.>>>.>-......]]]]]]--<<.<<<<<<<-------....--------->>>>>>>------------------------------------------------------------------------------------------------------------------------------.......>>.-]]]]].....
Sob.cL1923 -cuaugacagu-GACAGUUUUUCU--UUAGG-GCUGUCA---------------------------------AUAAAUAAAACUAUA---UGCUGGAACGUC-----(32)----UAUUGGAACC--------------------------------------GAGUA-------------------------------------GGU-AAAAUGCCAAUG----------UAGAAA-GAC---CAAUCAGCAGGAAACAAAAAAAAAUUUUU------------(695)---------------AAAAAUUUUUUAUUUGAUUCUUCAGAGACUA---------------------------------------------------CACGUUUUAUAAGUUAAUGU---------------------(31)---------------------GCAUUAAUGA-AAGAUAUAGUCC--AAAAUUUGUUUAUAUUUCAUUCUAAAUAUAAAUCGAUU---------------------------------------------------------------------------------------------------------------------GGAACA---CGCUAUUUG-ccuaagguag
-...<<<<<<<-............--[[[[[->>>>>>>---------------------------------.....<<<<<<....---<<<<<<...<<<-----~~~~----<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>----------......->>>---...>>>>>><<<<.<<<<<<<<<<<<<<<------------~~~~~--------------->>>>>>>>>>>.>>>>.>>>>...[.[[[[[---------------------------------------------------...>>>>>><..<<<<<<<<---------------------~~~~--------------------->>>>>>>>.>-......]]]]]]--<<<<<<.<<<<<<<<<<......>>>>>>>>>>.>>>>---------------------------------------------------------------------------------------------------------------------......---......>>.-]]]]].....
Cec.cL1923 -cuauaacggu-C-----(72)----UUAGG-GCCGUU---------------------------------UUAAAAGAUAACUAUA---UGCUGGAACAUCCUCAA-----GGUUAUUAGGACC--------------------------------------AAGCA-------------------------------------GGU-AAUACACUAAUAAUU-------------AUAGGA-CAAUCAGCAGGACACUACUU---------------------(653)-------------------------AAGUAGGUUCCUCAGAGACUA---------------------------------------------------CACGUUAUCAUAUUUAAACA---------------------(52)--------------------UGUUUAAAUAU-AAGAUAUAGUCCG-AU-CUUGCAA-------GUAA---------UUGUAAG----------------------------------------------------------------------------------------------------------------------UUAACACACACCUUAUUG-ccuaagguag
-....<<<<<<-<-----~~~~----[[[[^->>>>>>---------------------------------......<<<<<<....---<<<<<<....<<<<...-----<<<<<<<<<<<<<--------------------------------------.....------------------------------------->>>-....>.>>>>>>>>>-------------..>>>>-...>>>>>><<<<.<<<<<<---------------------~~~~~------------------------->>>>>>.>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<---------------------~~~~-------------------->>>>>>>>>>>-......]]]]]][-<.-<<<<<<<-------....--------->>>>>>>----------------------------------------------------------------------------------------------------------------------....]...........>.-]]]]].....
She.cL1923 -cuaugacggu-CAACU---------UUAGG-GCCGUC---------------------------------UUUAAAGAUAACUUUU---UGCUGGAACCUC------------------------------------------------------------CAUAAAAA--------------------------------------------------------------------GAG---CAAUCAGCAAGAGAUUAUAUUAUUUGUUCUAAUAA------(145)--------UUGUUGCGAACAAAUAAAAAUAGUUUCUUCAGAGACUA---------------------------------------------------CUGGUUAUCCGAUUUUAAAUA-------------------UUUUAG------------------UAUUUAAGAUUG-AAGAUAUAGUCCG-A-UAUUAUAU-------GAAU---------GUGUAAUA-----------------------------------------------------------------------------------------------------------------------AAUA-------CCUUG-ccuaagguag
-....<<<<<<-<....---------[[[[^->>>>>>---------------------------------......<<<<<<....---<<<<<<...<<<------------------------------------------------------------........-------------------------------------------------------------------->>>---...>>>>>><<<<<<<<<.<<<<<<<<<<<<<<<<------~~~~~-------->>>>>>.>>>>>>>>>>..>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<-------------------......------------------>>>>>>>>>>>>-......]]]]]][-<-<<<<<<<<-------....--------->>>>>>>>-----------------------------------------------------------------------------------------------------------------------..].-------...>.-]]]]].....
Tpe.bL1931 -guccuaaggu-AGCA---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCUUAACUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGUAAUCCGCAGGAAACCCC-------------------------GUGA-------------------------GGGGG-AUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCAUUCC------GAAA---------GGAUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAAGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<.<<<<<<<<--------------------------------....---------------------------->>>..>>>>>.>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<-------------------------....------------------------->>>>.-.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tna.bL1931 -guccuaaggu-AGCA---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGAAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGUAAUCCGCAGGAAACCCC------------------------GAUGA-------------------------GGGGG-AUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCAUUCC------GAAA---------GGAUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>.-.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tne.bL1931 -guccuaaggu-AGCG---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGGUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGCAAUCCGCAGGAAACCCC------------------------GUUGA-------------------------GGGGG-AUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(452)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCACUCC------GAAA---------GGGUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>.-.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tsp-1.bL1931 -guccuaaggu-AGCG---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGCAAUCCGCAGGAAACCCC------------------------GUUGA-------------------------GGGGGGAUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCACUCC------GAAA---------GGGUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>...>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tsp-2.bL1931 -guccuaaggu-AGCG---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGCAAUCCGCAGGAAACCCC------------------------GUUGA-------------------------GGGGGGAUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCACUCC------GAAA---------GGGUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>...>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tsp-3.bL1931 -guccuaaggu-AGCG---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGC--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGCAAUCCGCAGGAAACCCC------------------------GUUGA-------------------------GGGGGGAUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCACUCC------GAAA---------GGGUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>...>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Tsp-4.bL1931 -guccuaaggu-AGCA---------UUCGCU-GCC--------UGCCCACAGGGAAA-CCUGUGGGGCA-----AUACCCGGCUGUA---UGCGGGGAAGCCCUUAGAG-----CCCUUCCUACCUGGGGGU--------------------------------UGCG----------------------------GCCAGCCCAGGU-AAAAAUGGAAGGG----------------AUUGGGCAAUCCGCAGGAAACCCC------------------------GUUGA-------------------------GGGGG-AUCCUCAGAGACUG---------------------------------------------------UACGCCGGGCAUCCAGUCCCCGUGA---------------(451)----------------UCCGGGGACUGGAUG-AAGAUACAGUCC--ACCCCCACUCC------GAAA---------GGGUGGG-------------------------------------------------------------------------------------------------------------------------------AUAAGGGUG-agcgaaauuc
-.......<<<-<<<.---------[[[^^^->>>--------<<<<<<<<<<....->>>>>>>>.>>-----...<<<<<<....---<<<<<<...<<<<......-----<<<<<<<<<<<<<<<<<<--------------------------------....---------------------------->>>..>>>>>>>-....>.>>>>>>>----------------...>>>>..>>>>>><<<..<<<<------------------------.....------------------------->>>>.-.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<.<<---------------~~~~~---------------->>>>>>>>>>>>>>>-......]]]]]]--<<<<<<<.<<<------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>>.-]]]]]]....
Sne.bL1931 -guccuaaggu-UAAUA-----------GCUAGCCUUAG---------------------------------UAAAACCAAACUAUA---UGCGGGAAAACCCUCAAAAG---CUUUAAGGUACUCGUUUAGA-------------------------------UAAG------------------------------UCUAAGCAGU-AAAAAUCCUUAAAG------------AUAUGUGGGCGAUCCGCAGGAAAGACUAAUU---------------------(55)------------------------AAUUGGAAUCCUCAGAGACCA---------------------------------------------------AACGUUUGGAGUUUGAA-----------------------(385)-----------------------UUCAAACU-AAGAUAGAGUCC--GACUCUUUUG-------GAAA---------CAAAAGGG-------------------------------------------------------------------------------------------------------------------------------ACUAAUCG-agcgaaauuc
-...<<<<<<<-<<...-----------[[^>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<.......---<<<<<<<<<<<<.<<<<<<<-------------------------------....------------------------------>>>>>>>>>>-....>.>>>>>>>>------------......>>>...>>>>>><<<....<<<<<<---------------------~~~~------------------------>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<<-----------------------~~~~~----------------------->>>>>>>>-.......]]]]]--<<<<<<<<<<-------....--------->>>>>>>>-------------------------------------------------------------------------------------------------------------------------------.....>>.-]]].......
Msp-1.cL1931 -guccuaaggu-GAACGCAA--------GCU-GCCUUAG---------------------------------UAAAACUUAACUAUA---UGCUGGAAACUCCUUAAAAAGU---UGUCUCUACUCAUUUAGAAU-(13)-GCAAAAUCGCACGUA--------UUA-----UACGAGAGGUCGAUUGGGC-(13)AUUCUAGAUAGU-GAAAACGAGCAUCCU-------------AGAGGGACAAUCAGCAGGAAACCAACGAUGA-------------------AUAA----------------------UCAAGUAGGAUCCUCAGAGACUA---------------------------------------------------UACGUUGAGCUAUUUACAAGAACAAAUAUUUAAG------(494)-CUUUAAAAUAUUUGAUUUUCUAUAAACAAG-AAGAUAGAGUCCA-A--CAAAGA-------ACUAAUAA-------UCUUUG------------------------------------------------------------------------------------------------------------------------AUUA-------AAAUG-agcgaaauuc
-...<<<<<<<-<.......--------[[^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<.......---<<.<<<<<<<.<<<<<<<<<-~~~~-<<..<<<<<<.<<<<--------...----->>>>....>.>>>>>..>>-~~~~>>>>>>>>>>>>-....>.>>>>>....-------------..>>>>>...>>>>>><<<..<<.<<..<<<-------------------....---------------------->>>.>>.>>.>>>...[.[[[[.---------------------------------------------------...>>>>>><<.<<<<..<<<<<<<<<<<<<<<<------~~~~~->>>..>>>>>>>>>...>>>>.>>>>..>>-.......]]]]][-<--<<<<<<-------........------->>>>>>------------------------------------------------------------------------------------------------------------------------..].-------...>.-]]].......
Msp-1.mL1931 -guccuaaggu-GAAUU-----------UUC-GCCU--------------------------------------GUACUUGGCUAUU---UGCGGGAAUCUCCCCAAACA---UUGUAACGUACUCGAAAGC------------------------------UUUUCU-------------------------------GCUUUCAGU-CAAAAUCGUUCAAAC-------------AAGGGGACAAUCCGCAGGAAAGAAAAAU---------------------UCUACU----------------------AUUUUUCGCUCCUCAGAGACUG---------------------------------------------------UACGCCAAGCAUUUU-------------------------(465)-------------------------AAAAUG-AAGAUAAAGUCCG-AA-CUUUCUU-------GAAA---------AAGAAAG-AAAAAACAUAC-----------------(110)--------------GUAUGU-UUUUU----------------------------------------------------------AAAACA------CAAUUG-agcgaaauuc
-......<<<<-<<...-----------.^^->>>>--------------------------------------...<<<<<<....---<<<<<<....<<<<<.....---<<<.<<<<<<<<.<<<<<<------------------------------......------------------------------->>>>>>>>>-....>.>>>>>>>..-------------..>>>>>...>>>>>><<<..<<<<<<<---------------------......---------------------->>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<-------------------------~~~~~------------------------->>>>>>-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>-<<<<<<<<<<<-----------------~~~~~-------------->>>>>>->>>>>----------------------------------------------------------....].------...>>.-]]........
Msp-2.mL1931 -guccuaaggu-GAAUAA---------CAUU-GCCUU---------------------------------------CCUUGGCUAUU---UGCGGGAAUAUCCCCCAAU---AUGCAGACGUACUCGUUGACACA------GGUGAUGCGUUGGGGC-------UUG------GCCCAAGACGCUCUCACC------CGCUCUUCAGU-AAAAAUCGUCGCAUC-------------AUGAGGACAAUCCGCAGGAAAAAGAG-----------------------AGUUU-------------------------CUCUUGCUCCUCAGAGACUU---------------------------------------------------UACGCCAAGCAUCAA-------------------------(568)-------------------------UUGAUG-AAGAUAAAGUCCG-AA-CUUUUUC-------GAAA---------GAAAAAGAAGAAGAUACAGAUUAAAGAGU-------AUUC-----ACUCAUUUCAAUGUAUGCUUUU------------------------------------------------------------AACA------AUAUUG-agcgaaauuc
-.....<<<<<-<<....---------[.^^->>>>>---------------------------------------.<<<<<<....---<<<<<<....<<<..<<..---<<<<.<<<<<<<<....<<....------<<<<<.<<<<<.<<<<-------...------>>>>..>>>>>..>>>>>------...>>...>>>-....>.>>>>>>>>.-------------.>>.>>>...>>>>>><<<..<<<<<-----------------------.....------------------------->>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<-------------------------~~~~~------------------------->>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>.<<<<<<<<<<....<<.<<<<-------....----->>>>.>>....>>>>>.>>>>>------------------------------------------------------------..].------...>>.-]].]......
Msp-2.cL1931 -guccuaaggu-GAACGCAA--------GCU-GCCUUAG---------------------------------UAAAACUUAACUAUA---UGCUGGAAACUCCUCAAAA---AGGUGCGUCUACUCAUUUAAAAUU(10)-CCAAAAAAGCACG---------UGAAA------CGGUAAGUCGGUUUUGG(18)GAUUUUAAGUAGU-GAAAAUGAACAUCCU-------------AGGGGGACAAUCAGCAGGAAACCAAAGAU---------------------GCAA---------------------AUCGAGUAGGAUCCUCAGAGACUA---------------------------------------------------UACGCUAAGCUCAUGAAAAGAACAAAUAUCU---------(490)---------AGAUAUUUGGUCUUCUUUUGGG-AAGAUAGAGUCCA-AA-CAAAGA-------ACUAAUGA-------UCUUUG-------------------------------------------------------------------------------------------------------------------------------AUCAAAACG-agcgaaauuc
-...<<<<<<<-<.......--------[[^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<....---<<<<<..<<<<<<.<<<<<<<<<<~~~~-<<<<<<..<<.<<---------.....------>>>>.......>>>>>>~~~~>>>>>>>>>>>>>-....>.>>.>>.>>>-------------..>>>>>...>>>>>><<<..<<...<<<---------------------....--------------------->>>.....>>.>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<.<<.<<<<.<<<<<<<<<---------~~~~~--------->>>>>>>>>.>>>>.>>.>>>>-.......]]]]][-<.-<<<<<<-------........------->>>>>>-------------------------------------------------------------------------------------------------------------------------------.>.......-]]].......
Pcr.cL1931 -guccuaaggu-G-----------AAUUUAU-GCCUUAG---------------------------------UAAAACUUAACUGUA---UGCUGGAAUAUCCUCUAAAA----CAUGACAUACUCGCGAGACCCCAAU--GGCGCG----------------(18)--------------------GCCC-UGGGGGUUUUCGCAGU-GAUAAUUGAUCAUGAC------------AUGGGGACAAUCAGCAGGAAACCGAAGCAGGC------------------GGA----------------GCCAAAAUGCCUAGGGAUCCUCAGAGACUA---------------------------------------------------GACGUUAAGAAGAAAU------------------------(425)------------------------AUUUCUU-AAGAUAGAGUCC--GA-CUGUAAUG------GAAA-------CAUUAGUAG--------------------------------------------------------------------------------------------------------------------------------AUUAUUCG-agcgaaauuc
-...<<<<<<<-<-----------[[[[[.^->>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<.....----<<<<<<<<<<<.<<<<<<<<<<...--<<.<<.----------------~~~~-------------------->>>>-.>>>>.>>>.>>>>>>-....>.>>.>>>>>..------------..>>>>>...>>>>>><<<..<<...<<<<<<------------------...---------------->>>....>>>...>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<------------------------~~~~~------------------------>>>>>>>-.......]]]]]--<<-<<<<<<<<------....------->>>>>.>>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]...]]]]].
Nol.mL1931 -guccuaaggu-U-----(29)-----UGCUAGCCUUAU---------------------------------UAAAACCAAACUAUA---UGCUGGAAACUCCUC-(61)--GUCUUGUCAUACUCGUUAUUUCCU-----UAAUUUAGUUA-----------UUAUU------------UGAUUAGGUUA----CUGAAAUAGCAGU-GAAAAUUG-ACAGAAC------------AUGGGGACAAUCAGCAGGAAACCAAAUAACUC-----------------AACUU------------------GAGUUAAAGUAGGAUCCUCAGAGACUA---------------------------------------------------UACGUUUGGGAAUUUUCACAGCUUUC--------------(483)---------------GAAAGGAAGUAGAUUU-AAGAUAGAGUCC--AG-CUUUGAUU------GAAA--------GAUCAGAG--------------------------------------------------------------------------------------------------------------------------------AGAAACUG-agcgaaauuc
-...<<<<<<<-<-----~~~~-----[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<-~~~~--<<..<<<<<<<<<.<<<<<<<<..-----<<<<<<<<<<<-----------.....------------>>>>>>>>>>>----..>>>>>>>>>>>-....>.>>->>>..>>------------..>>>>>...>>>>>><<<..<<...<<<<<<-----------------.....------------------>>>>>>.....>>.>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<......<<<<<--------------~~~~~--------------->>>>>.....>>>>>>-.......]]]]]--<<-<<<<<<<<------....-------->>>>>>>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]]]]......
Cbr.cL1931 -guccuaaggu-U-----(29)----UCGCUAGCCUUAG---------------------------------UAAAACUAAACUAUA---UGCUGGAAACUCCUCCA---AAACUUAUCAGUACUAGAUC-------------------------------UCAAAGCAU-------------------------------GGUCAGU-AAAAAUCUGAAAGUUU----(54)--ACAU-GGGACAAUCAGCAGGGAAGACCAAUG--------------------AAACAA-----------------------CAUUGGAACCCUCAGAGACUA---------------------------------------------------UACGUUUGGAGGC---------------------------(470)---------------------------GCCU-AAGAUAGAGUCC--AG-CUUUGGUU------GAAA--------AAUCAGAG-------------------------------------------------------------------------------------------------------------------------------AUAGAACUG-agcgaaauuc
-...<<<<<<<-<-----~~~~----[[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<...---<<<<<<.<<<<<<<<.<<<<-------------------------------.........------------------------------->>>>>>>-....>.>>>>>>>>>>----~~~~--....->>>>...>>>>>><<<....<<<<<<--------------------......----------------------->>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<---------------------------~~~~~--------------------------->>>>-.......]]]]]--<<-<<<<<<<<------....-------->>>>>>>>-------------------------------------------------------------------------------------------------------------------------------......>>.-]]]]].....
Naq.cL1931 -guucuaaggu-UAAGAAA--------UGCUAGCUUUAG---------------------------------UAAAAUCAAACUAUU---UGCUGGGAACCC-----------------------------------------------------------GUAAUAAA-----------------------------------------------------------------------GG--AAAUCAGCAGGUAACUCUAUAA-------------------UAAUUUAU---------------------UUAUAGAGCACCUCAGAGACUA---------------------------------------------------UACGUUUGACGUUUUGAUG----------------------AAAA---------------------CAUCAACUUU-AAGAUAGAGUCC--AG-CGUUUUUU------GAAA--------GAAUAACG--------------------------------------------------------------------------------------------------------------------------------AUUAUCUG-agcgaaauuc
-...<<<<<<<-<......--------[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<-----------------------------------------------------------........----------------------------------------------------------------------->>--...>>>>>><<<..<<<<<<<<-------------------........--------------------->>>>>>>>.>>>...[.[[[[.---------------------------------------------------...>>>>>>....<<<<<<----------------------....--------------------->>>>>>....-.......]]]]]--<<-<<<<.<<<------....-------->>>.>>>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]]]]......
Cca.cL1931 -auccuaaggu-UGAAC----------CGCUAGCCUUAG---------------------------------UAAAACCAAGCUAUA---UGCUGGAAACUCCUCU---------------------------------------------------------(97)------------------------------------------------------------------------GGGGAUGAUCAGCAGGAAAUGAUCACUUAAUUUU--------------(42)-----------------AAAAAUAAGUGAUUUUCUUCAGAGACUA---------------------------------------------------CACGCUUGGCCCUUUCGAAUAAUAAAAAAACUU--------(69)------AAGUUAAAAAAUUAUAAAUAAGGUG-AAGAUAUAGUCC--AAACUCCAGU-------GAGA--------ACUGUGAG-ACCUGCUUC-------------------GUAA-------------------GGAACAGG-AGCUUAACC---------------UGGUA-----------------GGUUAAGUU--------------AUAUUG-agcgaaauuc
-...<<<<<<<-.....----------[[[[.>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<.---------------------------------------------------------~~~~------------------------------------------------------------------------>>>>>...>>>>>><<<<..<<<<<<<<<.<<<<--------------~~~~----------------->>>>.>>>>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<....<<<<<.....<<<<<--------~~~~------>>>>>.....>>>>>....>>>>.>-......]]]]]]--<<.<<<<<<<-------....-------->>>>.>>>-.<<<<.<<<-------------------....------------------->>>.>>>>-<<<<<<<<<---------------.....----------------->>>>>>>>>--------------...>>.-]]]]......
Cpa.cL1931 ---ccuaaggu-UAA-----------UUGCUAGCUUUAG---------------------------------UAAAACUGAACUAUA---UGCUGGAAAAUCCUC-(118)--AUGUCUUGUACGCUCGU-------------------------------AUUUUGCC------------------------------ACGAGCCGU-GAUAAUCAAGCGU-------------ACAUGGGGACAAUCAGCAGGGAAGGAUGUUUGAUACACGCAGAGUAGA-ACUGGCAG-UCUAGAAUCGGUCGGUAUCGCUAAACAUAACCCUCAGAGACUA---------------------------------------------------UACGUUCGGAAGUCUUA-----------------------(494)-----------------------UAAGAUUU-AAGAUAGAGUCC--AGCCUAUUUU------GAAGA---------AAAAUGGG------------------------------------------------------------------------------------------------------------------------------GUAAAUCUG-agcgaaauuc
---.<<<<<<<-<..-----------[[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<-~~~~~--<<<.<<<<<<<<<<<<<-------------------------------........------------------------------>>>>>>.>>-....>.>>>>>>>-------------....>>>>>...>>>>>><<<....<<<<<<<<<<<.<<<.<<.<<<<-........->>>>...>>.>.>>>>>>>...>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<<-----------------------~~~~~----------------------->>>>>>>>-.......]]]]]--<<<<<<<<<<------.....--------->>>>>>>>------------------------------------------------------------------------------------------------------------------------------......>>.-]]]]].....
Cko.cL1931 -auccuaaggu-UGAA----------UCGCUAGCCUUAG---------------------------------UAAAAUCAAGCUAUA---UGCCGGAAAACCCUCCGUG(45)-CCACUUAGACUCACUAA-------------------------------UUUAUU--------------------------------UUAGAAGU-AACACUUAAGUUGG------------ACAUGGGGACAAUCAGCAGGAAAGACUAAAC------------------CUUAACAC-----------------------GUUUAGAAUCCUCAGAGACUA---------------------------------------------------AUACGCUUGACUUUUAUAAAAAAUAACAAAUAAGGUUUUAAUG(348)CAUAAAACAUUAUAUUUUUUAUAAAAUG-AAGAUAGAGUCCA-AA-CUCCAGC-------GAGA--------GCUGUGAGACCUGUCUU--------------------(51)--------------------AAGACGG-AGCUCC-----------CUACCCCCGAAGGGGGAU--------------GGAG--AAGUAAGA--AAUUAUAUUG-agcgaaauuc
-...<<<<<<<-<...----------[[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<..<<.....<<<<<<<~~~~-<<<<<<<<<<<..<<<<-------------------------------......-------------------------------->>>>.>>>-....>.>>>>.>>>------------.>>>>>>>....>>.>>><<<....<<<<<<------------------........----------------------->>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>>.<<<<<<<<<<<<<<<.....<<<.<<<<<.<<<~~~~~>>>>>>>>.>>>>>>>>>>>>>>>>>.>-.......]]]]].-<<-<<<<<<<-------....-------->>>>.>>>..<<<<<<<--------------------~~~~-------------------->>>>>>>-..<<<<-----------..................-------------->>>>--........--.......>>.-]]]]].....
Cge.cL1931 -auccuaaggu-U-AAUUUG--------GCUAGCCUUAG---------------------------------UAAAACUAAACUAUA---UGCUGGAAACUCCUCAAACAG--CUUGAUCGUACUCGUCA--------------------------------(249)----------------------------------UGGCAGU-AAAAAUCGACAAG-------------ACAAGGGGACAAUCAGCCGGGAAGGCUUAAAUUUUUCGAUCA----------AAAA-----------UGAUCAAAAACAAUUUAAGAACCCUCAGAGACUA---------------------------------------------------UACGUUUGGAAAUUCUAGA---------------------(994)---------------------UCUAUAAUUU-AAGAUAGAGUCC--AG-CUCUUUUC------GAAA--------GAUUAGAG--------------------------------------------------------------------------------------------------------------------------------AUUAUCUG-agcgaaauuc
-...<<<<<<<-<-......--------[[[>>>>>>>>---------------------------------.....<<<<<<....---.<<<<<....<<<<<......--<<<<.<<<<<<<.<<<<--------------------------------~~~~~---------------------------------->>>>>>>-....>.>>>>>>>-------------....>>>>>...>>>>>.<<<....<<<<<<<<<<<.<<<<<----------....----------->>>>>.>>>..>>>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<.<<<<---------------------~~~~~--------------------->>>>.>>>>>-.......]]]]]--<<-<<<<..<<------....-------->>..>>>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]]].......
Cfr.cL1931 -auccuaaggu-UAAA-----------CGCUAGCUUUAG---------------------------------UAAAACUGAACUAUA---UGCUGGAAAACCCUCAAAAG---AUGUCUUGUACGUUUAGU------------------------------AGUUAGCC------------------------------ACUAAACGU-GAGAAUCAAGCAU-------------ACAGGGGGGCAAUCAGCAGGGAAGGAUGUUU--------------------(151)------------------------AAACAUAACCCUCAGAGACUA---------------------------------------------------UACGUUCAGGAGUC--------------------------(522)--------------------------GACUU-AAGAUAGAGUCC--AG-CCGAUUUU------GAAA--------AAAAUGGG--------------------------------------------------------------------------------------------------------------------------------AUUUUCUG-agcgaaauuc
-...<<<<<<<-<...-----------[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<.....---<<<.<<<<<<<<<<<<<<------------------------------........------------------------------>>>>>>>>>-....>.>>>>>>>-------------....>>>>>...>>>>>><<<....<<<<<<--------------------~~~~~------------------------>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<--------------------------~~~~~-------------------------->>>>>-.......]]]]]--<<-<<.<<<<<------....-------->>>>>.>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]]]]......
Cme.cL1931 -guccuaaggu-AGAC----------UCGCUAGCCUUAG---------------------------------UAAAACUAAACUAUA---UGCUGGAAACUCCUC--(53)--CCAUAUCGUACAAAGCU------------------------------UAAUUUGCCC------------------------------AGCUUUGU-GAAAAUCGUUUGG-------------ACAUGGGGACAAUCAGCAGGGAAGAAUGUCUAAAGUGCGCAGAAUGAGUU--GGC-AACUCAGAAUCGGUCGGCUUUAAUAGACAUAACCCUCAGAGACCA---------------------------------------------------AAUGUUUAGAAGCAAAAACUUAAUCU--------------(438)----------------AGAUUAGUCUUGCUU-AAGAUAGAGUCC--AG-CCUAUUUU------GAAA--------AACUUAGG--------------------------------------------------------------------------------------------------------------------------------AUAUACUG-agcgaaauuc
-...<<<<<<<-....----------[[[[[.>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<<<--~~~~--<<<...<<<<<<<<<<<------------------------------..........------------------------------>>>>>>>>-....>.>>..>>>-------------....>>>>>...>>>>>><<<....<<<<<<<<<<<..<<....<<<<<<--...->>>>>>......>>..>>>>...>>>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<....<<<<<<<--------------~~~~~---------------->>>>>>>..>>>>>>-.......]]]]]--<<-<<<<..<<------....-------->>..>>>>--------------------------------------------------------------------------------------------------------------------------------.....>>.-]]]]].....
Dpa.cL1931 -guccuaaggu-AAGGGUUAA------CGCUAGCUUUAG---------------------------------UAAAAUCAAGCUAUA---UGCUGGAAAUCCUUAA-------AAUAAAC---------------------------------------CAUAAACAAAAGA-------------------------------------------GUUUAUU-----------------CAAGAUAACCAGCAGGAAAGACUAAGUAAUAGGGUGGG---------UUUAA----------CCCAACCCCAAACAACCUAGUAUCCUCAGAGACUA---------------------------------------------------CACGCUUGACACUUUUACAUAAGUGAGUAUUAUUAAUCUUCUC-UAUAGAAAGAUUAAAAUAACACUUAGAAAGUG-AAGAUAGAGUCC--AAACUCCAGC-------AUGA--------GCUGUGAG-ACCUAACUC-------------------GUAA-------------------GGAUUAGGGGGUUUAUCUU---------------AAUA----------------AAGAUAAAUU--------------AUAUUG-agcgaaauuc
-...<<<<<<<-.........------[[[[.>>>>>>>---------------------------------.....<<<<<<....---<<<<<<..<<<.....-------<<<<<<<---------------------------------------.............------------------------------------------->>>>>>>-----------------...>>>..>>>>>><<<...<<<<.<<....<<<<<<<---------.....---------->>>.>>>>......>>.>>>>.>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<...<<<<<<..<<<<.<<<<<<<<.<<-....>>>>>>>>>>>>>>.>>>>>>>>>>>>>-.......]]]]]--<<.<<<<<<<-------....-------->>>>.>>>-.<<<<<..<-------------------....------------------->..>>>>>.<<<<<<<<<<---------------....---------------->>>>>>>>>>--------------...>>.-]]]]......
Hla.cL1931 -auccuaaggu-G-----(23)------GCU-GCCUUAC----UUCUUAG---GUAA-----CUAAGAA-UAUUUAACUUCACUAUU---UGCGGGAACACCCUCAAAAG-----AUGAGCAUACAC--------------CUUAUUCAG-------------(93)----------------CUGAAAAG-------------UCGUAAAAUUUGCUCAU--------------ACACGGGGACAAUCCGCAGGAAACC---------------------------(90)-----------------------------GGUUCCUCAGAGACUA---------------------------------------------------UACGUGAAGAUACUAUGAAUU-------------------(768)-------------------AAUUGGUAGUAU-AAGAUAGAGUCCG-GU-CUAAUGU-------GAAA--------ACAUUAGA--GUAGCUCUAGCCUGAACUCUAACG---UUUA-UGGAAGAGAGUCCGGGCCAGAGCUACACAAAGUUUUGGU------------(166)---------------ACUAAAAUUUUUGUUAACA-------UAACA-agcgaaauuc
-....<<<<<<-<-----~~~~------[[^->>>>>>.----<<<<<<<---....----->>>>>>>-.......<<<<<<....---<<<<<<....<<<<......-----<<<<<<<<<<..--------------<<<.<<<<<-------------~~~~---------------->>>>>>>>-------------..>>>....>.>>>>>>--------------....>>>>....>>>>>><<.<<<<---------------------------~~~~----------------------------->>>>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<.<<<<-------------------~~~~~------------------->>>>.>>>>>>>-.......]]]]][-<<-<<<<<<<-------....-------->>>>>>>>--<<<<<<<<.<<<<<.<<<<<..<<---....->>....>>>>>.>>>>>.>>>>>>>>..<<<<<<<<<<<------------~~~~~--------------->>>>>>>>>>>......].-------...>.-]]].......
Ptu.cL1931 -guccuaaggu-U-----(20)----UCGCUAGCCUUAG---------------------------------UAAAAUCAAACUAUA---UGCUGGAAACUCCUCCAAAA---CUUCUUUGUACUCAUCCCAAA-----------------------------UUUU------------------------------UUUGGCAUAGU-AAAAAUCAAAAAG-------------ACAUGGGGACAAUCAGCAGGGAAGACUUUCU-------------------CUUUCAA-----------------------AGAAAGAACCCUCAGAGACUA---------------------------------------------------UACGUUUGGGGAUAUUUC----------------------(410)----------------------GGAAUAUCU-AAGAUAGAGUCC--AG-CUCAUCAU------GAAA--------AUGAUAAG-------------------------------------------------------------------------------------------------------------------------------AUUAUACUG-agcgaaauuc
-...<<<<<<<-<-----~~~~----[[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<.<<<...---<<<.<<<<<<<<.<<.<<<<<-----------------------------....------------------------------>>>>>.>>>>>-....>.>>>>>>>-------------...>>>>>>...>>>>>><<<....<<<<<<-------------------.......----------------------->>>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<<<----------------------~~~~~---------------------->>>>>>>>>-.......]]]]]--<<-<<.<<<<<------....-------->>>>>.>>-------------------------------------------------------------------------------------------------------------------------------......>>.-]]]]].....
Chl_vu.mL1931 -guccuaaggu-U-----(49)----UCGCUAGCCUUAG---------------------------------UAAAACUAAACCAUA---UGCUGGAAACUUCUCAAAAA---CUUUCUACUACUCGU-------------AAGUGU----------------GUCA------------------ACACUU------------UCAGU-GAAAAUGUAAAAG-------------ACACGGGGACAAUCAGCAGGAAAGAUUUUUGG-----------------UGUAAAAAU---------------------CCAAAAAAAUCCUCAGAGACUU---------------------------------------------------UACGUUUGGGGAUCUUUCUGUACUU---------------(494)-------------AAGUACAUUGAUAGAUCU-AAGAUAAAGUCC--AG-CUCUUUAU------GAAA--------AUAAAGAG-------------------------------------------------------------------------------------------------------------------------------AUUA-ACUG-agcgaaauuc
-...<<<<<<<-<-----~~~~----[[[[[>>>>>>>>---------------------------------.....<<<<<<....---<<<<<<.....<<<<.....---<<<<.<<<<<<<...-------------<<<<<<----------------....------------------>>>>>>------------..>>>-....>.>>>>>>>-------------.....>>>>...>>>>>><<<....<<<<<<<-----------------.........--------------------->>>>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<.<<<<<<<<<---------------~~~~~------------->>>>>>>..>>.>>>>>>-......]]]]]]--<<-<<<<<<<<------....-------->>>>>>>>-------------------------------------------------------------------------------------------------------------------------------....-.>>.-]]]]].....
Mvi.mL1931 -guccuaaggu-AAAAUA----------GCUAGCCUUAG---------------------------------UAAAACUAAACUAUA---UGCGGGAAACUCUUAAAG------CCUUUUCAUACA-------------------------------------ACU--------------------------------------UGUA-AAAAUGGAAAAGGAUUUUUGUAAAAAAAAAAUAGACAAUCCGCAGGAAAGACUAUU---------------------GAAAA-------------------------AAUAGAAUCCUCAGAGACCA---------------------------------------------------AACGUUUAGAAUUUAUCAUG--------------------(400)--------------------UAUGGUGAAUU-AAGAUAGAGUCC--GA-CUUUAUUU------GAAA--------GAGUAAAG-------------------------------------------------------------------------------------------------------------------------------AUUA-AUCG-agcgaaauuc
-...<<<<<<<-......----------[[[.>>>>>>>---------------------------------.....<<<<<<....---<<<<<<....<<<.....------<<<<<<<<<<<<-------------------------------------...-------------------------------------->>>>-....>.>>>>>>>.<<<<<......>>>>>..>>>...>>>>>><<<....<<<<<---------------------.....------------------------->>>>>..>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<<<<<--------------------~~~~~-------------------->>>>>>>>>>>-.......]]]]]--<<-<<<<<<<<------....-------->>>>>>>>-------------------------------------------------------------------------------------------------------------------------------....-.>>.-]]].......
Cha_vu.mL1931 -ugccuaaggu-AAU-----------UUCGUUGCCUUAC----UUUCUAG---GUGA-----CUAGAAA-UAGGAAACUCCACUGUA---UGCGGGAAACUCCUCGAAUA----GAUAGAAUGAAUUUCU---------------------------------AGAU--------------------------------------AGUAAUUUCAUUCAAUUA----------------GAGGGCAAUCCGCAGGAAACCAAAACAC--------------------AUUU----------------------GUCAGUAGGAUCCUCAGAGACUU---------------------------------------------------UACGUGGAGCUACUACUAAUUUCAUGAAUAA---------(157)-----------UUAUUGAUUGAUUGUAGUAG-AAGAUCAAGUCCG-GU-CUGCCUU-------GAAA---------AAGGUAGCAAGUAGCUAAA--------------AGCAAAACCAAA-----------------UUUAGC-------------------------------------------------------GAAUAACA------UGAACA-agcgaaauuc
-....<<<<<<-<..-----------[[[[[>>>>>>>.----<<<<<<<---....----->>>>>>>-.......<<<<<<....---<<<<<<....<<<<<.....----<<<.<<<<<<<.<<<<---------------------------------....-------------------------------------->>.>>.>>>>>>>.>>>.---------------->>>>>...>>>>>><<<..<<.....<<--------------------....---------------------->>.....>>.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<.<<<<..<<.<<<<<---------~~~~~----------->>>>>.>>.>>>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>......<<<<<<--------------............----------------->>>>>>-------------------------------------------------------......].------...>>.-]]]]].....
Aca.mL1931 -guccuaaggu-GAA----------UUUGUU-GCCUU------CUCUUUUG--GUAA----CAAAAGAG--CAAACAUUCAACCGUA---UGCCGGAAUAUCCUCAAAAG---ACUUAAGGUGCACCAAC--------------------------------UUUUU---------------------------------GUUGUAGC-AAAAAUCCUUAGU-------------ACACGGGGACAAUCGGCAGGAAACCUUAAAA--------------------UUUAUU---------------------UUGAAAGGGAUCCUCAGAGACUA---------------------------------------------------UACGUUGAAUAUCCUUAUAGUAGUAAUAAAA---------(431)--------------UUUUAUUUUUAAGGAUA-AAGAAAUAGUCCG-AA-CUUAGCA-------GAAA---------UGUUAAG-AGUGCCAAUCAUUAAGCUGUUUCUAUUUAUAACAUAAAUAUAUAGCGCGCUAGAUUGUGC----------------------------------------------------------CAACA-------AAUUG-agcgaaauuc
-.....<<<<<-<<.----------[[[[^^->>>>>------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<....<<<<<.....---<<<.<<<<<<<..<<<<--------------------------------.....--------------------------------->>>>..>>-....>.>>>>>>>-------------....>>>>>...>>>>>><<<..<<<<..<<--------------------......--------------------->>..>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<.......<<<<<<<---------~~~~~-------------->>>>>>>..>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>-.<<<<.<<<<.....<<<<<...<<<<<<<...>>>>>>>.>>>>>......>>>>>>>>----------------------------------------------------------...].-------..>>.-]]]]]]....
Cha_vu.mL2262 -gcggaugccu-UA-------------UCUG-GGGCG------CUUACACA--GUAA----UGUUAAAG---GCAAAUCUGGCUAUA---UGCUGAAACCUCCG---------AGUAU--------------------------------------------CCAUGA--------------------------------------------------AUGC---------------GUCCGGACAAUCAGCAGGGAAGGAAGUC----------------------UAA------------------------GACCGUAAAGCCUCAACGACUG---------------------------------------------------CACGCCAGACAUCCCAAGCAUAU-----------------AUAUAA-----------------AUAAGAUGGGAUG-AUGAUACAGUCUG-AA-CUUCCAG-------GCGA---------CUGGAAG--CUCAAGCG---------------------UUU-------------------CGCUUGGGAUCUAAUC------------------(48)-------------------GAUUAGA-UUAACA------CAAUUG-ccuaaagagu
-.....<<<<<-<<-------------[[^^->>>>>------<<<..<<<--....---->>>..>>>---.....<<<<<<....---<<<<<<....<<<<---------.<<<<--------------------------------------------......-------------------------------------------------->>>>---------------...>>>>...>>>>>><<.......<<<----------------------...------------------------>>>.......>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<....<<<-----------------......----------------->>>...>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<---------------------...------------------->>>>>>>>.<<<<<<<------------------~~~~------------------->>>>>>>-....].------...>>.-]....]]]..
Tag.cL2262 -gcggucgucu-UAAA----------UUAUG-GGACG------CUUCUAUU--GCAA----AAUAGAAG---GCAAAUUUAGCUAUA---UGCUGGGACAUCCGU--(52)---CCAAUAUGACUUUA----AAAAA----AAAGUGCU------------GUAAAAAA--------------AGUACUUU---AAAAG--------UAACACUAUAUUGG-----------------UGCGGACAAUCAGCAGGGAAGUUUACAAA--------------------(45)-----------------------UUUGUAUACCCCUCAACGACUA---------------------------------------------------CACGCUGAACAUCCAAGAAAAGAUACU--------------GGUU--------------AGUAUCGCUUUUGGAUG-AUGAUAUAGUCUG-AA-CUUAUAG-------GCGA---------CUAUAAG--CUUAGUUUAAUCU---------------ACAAG-------------AGAUUAAAUUAGG-UAAUCU------------------(658)--------------------AGAUUA---AACA------UUUUUG-ccuaaaaggu
-.....<<<<<-<<..----------[[.^^->>>>>------<<<<<<<<--....---->>>>>>>>---.....<<<<<<....---<<<<<<....<<<<<--~~~~---<<<<<<<<...<<<----.....----<<<<<<<<------------........-------------->>>>>>>>---.....-------->>>...>>>>>>>>-----------------.>>>>>...>>>>>><<<..<<.<<<<<<--------------------~~~~----------------------->>>>>>.>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<...<<<<<<--------------....-------------->>>>>>..>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<<<<<<---------------.....------------->>>>>>>>>>>>>-<<<<<<------------------~~~~~-------------------->>>>>>---..].------...>>.-]..].]]...
Cca.cL2262 -gcgaaugccu-UGA------------UUUG-GGGCC------UUAAUCAU--GAA-----AUGGUUAA---GAAAACUUGGCUAUG---UGCUGGAACAGCCGU--(60)---CUUGAACUACCGGA-----------------------------------UUUU-----------------------------------UCCGGU-GAAAAUGUUCAAG----------------UGCGGCCAAUCAGCAGGGAAGUCCUCUGUUAUUUU-------------AUAAA-------------------AAAAUAAUAUGACCGUUCAACGACUA---------------------------------------------------CACGCCGAGCAUCC--------------------------GUAAAA-------------------------GGGUG-GUGAUAUAGUCUG-AA-CUACAUU-------GCGA--------AAUGUAGU--GUAAAUUUAC------------------UUAA-----------------GUAAGUUUACAGGUUUGA------------------(88)-------------------UCAAAUU---AACA------UAUUUG-ccuaaaaggu
-......<<<<-<<.------------[[^^->>>>.------<<<<<<<<--...----->>>>>>>>---.....<<<<<<....---<<<<<<....<<<<<--~~~~---<<<<<<<<<<<<<<-----------------------------------....----------------------------------->>>>>>-....>.>>>>>>>----------------.>>>>>...>>>>>><.<..<<<...<<<<<<<<<-------------.....------------------->>>>>>>>>.>>>>.>...[.[[[[[---------------------------------------------------...>>>>>><<<<<--------------------------......------------------------->>>>>-......]]]]]][-<<-<<<<<<<-------....-------->>>>>>>>--<<<<<<<<<<------------------....----------------->>>>>>>>>>.<<<<<<<------------------~~~~------------------->>>>>>>---..].------....>.-]..]]]....
Csp.cL2262 -gcggaugccu-UAACACAAA-------AUG-GGGCG------CCUAUUUG--GUAA----CAAAUGGG---GCAAACUUGGCUAUA-UGUUCUGGAACAACCGU----------------------------------------------------------(93)------------------------------------------------------------------------GCGGUCAACCAGCAGGGAAGUCCUCUGGGGUUUU--------------UCUU----------------AAAAUCCUCAGUUGACCCCUCAACGACUA---------------------------------------------------AACGCCGAGCGACCUUGUUUAGUCCCC--------------(48)-------------GGGGGGUAAAUAAGGUUG-AUGAUAUAGUCUG-AA-CUUCCGG-------GCGA---------CCGGAAG--CGUAUUUU---------------AAAUAAGUAAAAA---------------AAAGUAUG-------------------------(920)----------------------------CAACA------CAAUUG-ccuaaagugu
-.....<<<<<-<<.......-------[>^->>>>>------<<<<<<<<--....---->>>>>>>>---.....<<<<<<....-<<..<<<<....<<<<<----------------------------------------------------------~~~~------------------------------------------------------------------------>>>>>...>>>>>><<<..<<<..<<<<<<<<<<--------------....---------------->>>>>>>.>>>..>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<.<<<<<--------------~~~~------------->>>>>.>>>>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<---------------.............--------------->>>>>>>>-------------------------~~~~~----------------------------...].------...>>.-].].......
Cpa.cL2262 -gcgaaaaccu-UAA----------UUUUUG-GGGUG------CUUGUAUG--GCGA----CAUACAAG--GCAAUAUUUGGCUAUA---UGCUGGGACAACCGU--(47)---CCAAUGCUAAGAG-----------------------------------UUUAU------------------------------------CUCUU-GAAAAUGCACUUGG---------------UGCGGUUAAUCAGCAGGGAAGUCCUCUGGCUAUCUCAUUUCCCUUUCGCUUCCAGCUAGGGAAGCUGGCAAAAGAAAGCUAUGACCCCUCAACGACUA---------------------------------------------------CACGCUGAACUACCUAU-----------------------(183)-----------------------AUAGGUAG-AUGAUAUAGUCUG-AA-CUUCAAG-------GCGA---------CUAGAAG-AGUAUUUUAAGAUA---------------(684)-------------UAUACUUAGAAU-----------------------------------------------------------CAACA------CAAUUG-ccuaaaaggu
-......<<<<-<<.----------[[[[^^->>>>.------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<...<<<<<<--~~~~---<<<<<<<<<<<<<-----------------------------------.....------------------------------------>>>>>-....>.>>>.>>>>---------------.>>>>>>..>>>>>><<<..<<<...<<<<<.<<<..<<<.<<....<<<<<<......>>>>>>.>>.>>>>>>.>>>>>.>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<-----------------------~~~~~----------------------->>>>>>>>-......]]]]]][-<<-<<<<.<<-------....--------->>.>>>>-...<<<<<<<<<<<---------------~~~~~------------->>>.>>>>>>>>-----------------------------------------------------------...].------...>>.-]..]]]]]..
Cfr.cL2262 -gcgaacaccu-UAA-----------UUAUG-GGGUG------CUUAUAUG--GAAA----CAUAUAAG---GUAAAUUUGGCUAUA---UGCUGGAACAACCGU--(47)---CCAAGGCUAAGUACUU---------------------------------GCAU---------------------------AAGUACAACAAAUU-GAAAAAGCACUUGG---------------UGCGGUCAAUCAGCAGGGAAGUCCUCUGUUUAU--------------AUUGUAAAA----------------AUAAAUAU--GACCCCUCAACGACUA---------------------------------------------------CACGCCGAACAUCCUUAAUCUUUUUU--------------AUUAAA-------------AAAAAAGAUUAAGGAUG-AUGAUAUAGUCUG-AA-CUUCUAG-------GCGA---------CUAGAAG-CGCAUUUAAG-------------------(816)---------------CUUAAA-------------------------------------------------------------AUCAACA------UUUUUG-ccuaaaaggu
-.....<<<<<-<<.-----------[[[>^->>>>>------<<<<<<<<--....---->>>>>>>>---.....<<<<<<....---<<<<<<....<<<<<--~~~~---<<<<<<<<<<<<<<<<---------------------------------....--------------------------->>>>>>......>>-....>.>>.>>>>>---------------.>>>>>...>>>>>><<<..<<<...<<<<<<<--------------.........---------------->>>>>>>.-->>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<<<<<--------------......------------->>>>>>>>>>>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>-....<<<<<<-------------------~~~~~--------------->>>>>>-------------------------------------------------------------.....].------...>>.-].]]].....
Cmo.cL2262 -gcggaugccu-CGA----------UUAGUG-GGGCU------UUUCACUA--GUGA----UAAUGAAA---UCAAAUUUGGCUAUA---AGCUGGAACACCUGU---------------------------------------------------------(340)------------------------------------------------------------------------GCAGAUAAUCAGCUGGGAAGUUUUCUAACAAAACU------------UACUAU----------------GGUUUAGUUAUAAACCCUUCAACGACUA---------------------------------------------------CACGCCAAAACCUAA----------------------UAUUCGAAAAU----------------------UUAGGUUAUGAUAUAGUCUG-AA-CUAUUAG-------GCGA---------CUAAUAG------------------------------(955)------------------------------------------------------------------------------------UAACA------AUAUUG-ccuaaagcgu
-......<<<<-<<.----------[[[[>^->>>>.------<<<<<.<<--....---->>.>>>>>---.....<<<<<<....---<<<<<<.....<<<<---------------------------------------------------------~~~~~------------------------------------------------------------------------>>>>....>>>>>><<<..<<<<..<<<<.<<<<<------------......---------------->>>>>.>>>>.>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<----------------------...........---------------------->>>>>>.......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>------------------------------~~~~~------------------------------------------------------------------------------------...].------...>>.-]]]]].....
Tag.cL2500 -uuuggcaccu-CG----(15)-----AACG-GGGUC------CAAGUUUG--GAAA----CACACUUG--UGAGAAUUUAGCUAUA---UGCUGGGAAAUCCGAGUAU-----CUUUAUUGACGA-------AG------AAGAGACAAG-----------(164)--------------CUAGUUUUAU-----------UCUCGU-AAAACUAAUAAAG----------------UGCGGAUAAUCAGCAGGGAAGUUUA------------------------(86)-----------------------------AACCCCUCAACGACUA---------------------------------------------------CACGCUGAACAUCC---------------------------(19)--------------------------GGAUG-GUGAUAUAGUCUG-AU-CUUUUAG-------GCGA---------CUAAAAG--GCAAACCCAAAUGUGAAAAUAUGUUA(101)UGAUAUAAUCUUAUUUUUGGUUGUUUGC-AUUAAAUUUGUG---------AUAAAAAGUAAUACU-----CAUACAAAUUUAAU--UAACA-------UUAUG-cgaugucggc
-......<<<<-<<----~~~~-----[[^^->>>>.------<<<<<.<<--....---->>.>>>>>--......<<<<<<....---<<<<<<...<<<<<.....-----<<<<<<<<<<<<-------..------<.<<<<<.<<-----------~~~~~-------------->>.>>>>>.>-----------..>>>>-....>.>>>>>>>----------------..>>>>>..>>>>>><<<..<<<..------------------------~~~~----------------------------->>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<---------------------------~~~~-------------------------->>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<<<<.<<<<...<<<<<<<~~~~~>>>>>>>...>>>>.>>>>>..>>>>>>-<<<<<<<<<<<<---------...............-----..>>>>>>>>>>>>--...].-------..>>.-]].].]....
Msp-2.cL2500 -uuuggcaccu-CAACAA-------ACAUCG-GGG-C------UUUAGAAUC-GAAAA--GAUUCUAAG-UAUGCAUUUCUCUUAUA---UGCAAGGACCUCUGGAAGCAG---CUUUCUCACCUUUUC----GA------GGAGUUCAAAAGU--------AUUUAA-------------ACUUUUCUCC----AUAGACAAAAAGGGAAUAUCAGAAAG--------------AGAACCUGACAACUUGCAGGGAAGAACGACUGCGUGUACC------------UUCU---------------GGACACUCGGUCAAUCACCCUCAACGACUU---------------------------------------------------UAUGAGAAACACCC--------------------------ACUUC--------------------------GGGUG-AUGACAAAGUCU--ACUCUUGGUU-------GAAA---------AAUCAAGG-ACAACCUCGUAAUGAAACAAAACA---UGAG-----UGUUUUUCUUCAGAAGAUGUUGGCAUACAAUAGAAUGA----------(758)-----------UCAUUUCAAUUGUAU------------UAAUUCG-cgaugucggu
-.......<<<-<.....-------[[[[[^->>>-.------<<<<<<<<<-.....-->>>>>>>>>-.......<<<<<<....---<<<<<<....<<.<<......---<<<<<<.<<<<<<<<----..------<<<<...<<<<<<--------......------------->>>>>>>>>>----...>>...>>>>>.....>.>>>>>>--------------....>>.>>...>>>>>><<<..<<..<<<<<.<<<<.<<------------....--------------->>>>>>.>>>>>..>>.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<--------------------------.....-------------------------->>>>>-......]]]]]]--<.<<<<<<<<-------....--------->>>>>>>>-.<<<<.<<....<<<<..<<<<<<---....----->>>>>>..>>>>...>>.>>>>..<<<<<<<.<<<<<<----------~~~~~----------->>>>>>..>>>>>>>------------....>..-]]]]]]....
Nol.mL2500 -uuuggcaccu-CA-------------AUCG-GGG-C------UAUAAAAAC-GUAA---GUUUUUAUG-UAUGCA-UUCGGCUAUA---UGCGAGAAACUCUGU---------------------------------------------------------(124)-----------------------------------------------------------------------CGCAGACAACCCGCAGGAAACCAAAUAACUUAAU-------------GGAAAUAG-------------AUUGAGUUAAAGUAGGAUCCUCAACGACUA---------------------------------------------------CACGCCGAAAAUCCAAUAUUCA------------------AUAGUA-----------------UGAGUAUUGGAUU-AUGAUAUAGUCUG-A-ACUGGUUU-------GCGA---------AAAUCAGU-CCGCUUUU-----------------GAUCAAAA-----------------AAAAGACGG----------------------------------------------------------GAACG(736)---CUUC-cgaugucgac
-.......<<<-<.-------------[[[^->>>-.------<<<<<<<<<-....--->>>>>>>>>-......-<<<<<<....---<<<<......<<<<<---------------------------------------------------------~~~~~-----------------------------------------------------------------------.>>>>>.....>>>><<<..<<...<<<<<<<<<-------------........------------->>>>>>>>>.....>>.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<------------------......----------------->>>>>>>>>>>>>-......]]]]]][-<-<<<<<<<<-------....--------->>>>>>>>-<<<<<<<<-----------------........----------------->>>>>.>>>----------------------------------------------------------...].~~~~~---..>.-]]]]......
Naq.cL2500 -uuuggcaccu-CAA--------CGACAUCG-GGG-C------UUUAUUAUA-ACGA---UAUAAUAAA-----CGAAUUCAGCUAA---UGCUGGGACAUCUAU----------------------------------------------------------ACU-------------------------------------------------------------------------AUAGAUAAUCAGCAGGGAAACUU------------------------AAAAAC--------------------------AAGGGCCCUCAACGACUA---------------------------------------------------GACGCUGAACAACU--------------------------AAAAC--------------------------AGUUG-AAGAUAUAGUCUG-A-CCUAUAAG-------GUAA---------CUUAUAGG-CUAGUGUUU---------------CACAUACCA-----------------AAACACUAGCUGAAAAU-----------------(718)-------------------GUUUUCA--UAACA-------UUUUG-cgaugucggc
-.......<<<-<..--------[[[[[[[^->>>-.------<<<<<<<<<-....--->>>>>>>>>-----...<<<<<<....---<<<<<<...<<<<<<----------------------------------------------------------...------------------------------------------------------------------------->>>>>>..>>>>>><<<...<<<------------------------......-------------------------->>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<--------------------------.....-------------------------->>>>>-......]]]]]][-<-<<<<<<<<-------....--------->>>>>>>>-<<<<<<<<<---------------.........----------------->>>>>>>>>.<<<<<<<-----------------~~~~~------------------->>>>>>>--...].-------...>.-]]]]]]]]..
Ast.cL2500 -uuuggcaccu-UAA-----------CAUU-UGGUGU------CGGUAUAAGAGCAA--UCUUUUACUG----UCAAUCUGGCUGUA---UGCUGGGACGUCC(30)GCAGAAUGCUUCACUACAUUCU---------------------------------UUAAU----------------------------------AGAAUGU-GAAAACGUAGAGCUGC----------------GGAUAAUCAGCAGGGAAGUUCGCUGACUUCGAU-------------UUAAC-----------------GUCAAAGUUAUGACCCCUCAACGACUA---------------------------------------------------CACGCCGGACAACCUAUUUAU-----------------UCUUAAACU-----------------GUAAAUAGGCUG-AUGAUAUAGUCUG-A-UCUAGUAG-------GCGA---------CUAUUAGA-GCAAGGAGAGCUAUGC-----------CUUGU------------GCAAAGUCAACUUGCGAAGAAAUCUG--------------(771)----------------CGGAUUUCUU-UUAACA------UACAUG-cgaugucggc
-......<<.<-<<<-----------[[[^->>>.>>------<<<<<.<<<<....-->>>>.>>>>>----....<<<<<<....---<<<<<<...<<<<~~~~<<<<..<<<.....<<<<<<<<---------------------------------.....---------------------------------->>>>>>>-....>.>>>...>>>>---------------->>>>..>>>>>><<<..<<<...<<<<<<.<<<-------------.....----------------->>>.>>>>>>.>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<.<<<<<<<<<-----------------.........----------------->>>>>>>>>.>>-......]]]]]][-<-<<<<<<<<-------....--------->>>>>>>>-<<<<<..<<.<<.<<<-----------.....------------>>>.>>>>..>>>>>.<<<<<<<<<<--------------~~~~~---------------->>>>>>>>>>-....].------....>.-.]]]].....
Cst.cL2500 -uuuggcaccu-C----------GACAUAGG-GGGUC------GCUUUCAC--GCAA----GUGAAGGC--UG-UAAAUUAGCUGUA---UGCUGGAACUUACCU----------------------------------------------------------AUU-------------------------------------------------------------------------AGGUAAAAUCAGCAGGAAGUGAAGCA----------------------CACG------------------------UGUUUAGCUCCUCAACGACUA---------------------------------------------------CAUGCUAACACUCUUGUCCUUGCGUCCU-------------(73)-------------AGGACGCAAGAGCAGAGUGAUGAUAUAGUCUG-AA-CUACGCU------UUAAC---------GGCAUAG--ACCAAC----------------------UUA----------------------GUUGGU-UUCUUUCUAG--------------AUAAC----------------CUAGGAGGGA--UAACA------UAUUUG-cgaugucggc
-......<<<<-<----------[[[[[..^->>>>.------<<<<<<<<--....---->>>>>>>>--..-....<<<<<....---<<<<<<...<<<<<<----------------------------------------------------------...------------------------------------------------------------------------->>>>>>..>>>>>><<<.<<.<<<<<----------------------....------------------------>>>>>.>>>>>...[.[[[[[---------------------------------------------------...>>>>>.<<<<<.<..<<<<<<<<<<-------------~~~~------------->>>>>>>>>>..>>>>>>.......]]]]]][-<<-<<<.<<<------.....--------->>>.>>>--<<<<<<----------------------...---------------------->>>>>>-<<<<<<<<<<--------------.....---------------->>>>>>>>>>--...].------...>>.-].]]]]]...
Cze.cL2500 -uuuggcaccu-CAAA---------CAUCAG-GGGUC------UUCGUGCU--GUAA----AGCAC-AA--UGUCAAUCUGGCUAUA---UGCUGGGAACUCCGU--(32)----CCUUCGUCCCAGUA--------------------------------AAAUGUUA---------------------------------UACUGGAAAGCAUCGAAGG-----------------UGCGGACAAUCAGCAGGGAAGUCCUCUACUUAUUAAU------AAAUUAACAUUAAAU-AUA--------GUUAAUAAGCAUGACCCCUCAACGACUA---------------------------------------------------CACGCCGGACAUGCUACCCCCC-------------------UAAA------------------GGGGGGUAGGAUG-GUGAUAUAGUCUG-AA-CUACUGG-------GCGA---------CUAGUAG--AUCUAUCGGUAUC--------------GUUAA--------------GGAGCCGAUGGAUAUUGAGUGUUA--------------(727)------------------UAACACUCUUUAACA------UUAUUG-cgaugucggc
-......<<<<-<...---------[[[[.^->>>>.------<<.<<<<<--....---->>>>>->>--......<<<<<<....---<<<<<<....<<<<<--~~~~----<<<<<<<.<<<<<<--------------------------------........--------------------------------->>>>>>.....>.>>>>>>-----------------.>>>>>...>>>>>><<<..<<<.....<<<<<<<<<------...............-...-------->>>>>>>>>...>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<.<<<<<<<<<-------------------....------------------>>>>>>>>>.>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<<<.<<--------------.....-------------->>.>>>>>>>>>>...<<<<<<<<--------------~~~~~------------------>>>>>>>>.....].------...>>.-]]]]].....
Cfr.cL2500 -uuuggcaccu-CGAAA--------CAUCAG-GGGUC------UUUGUGCU--GUAA----AGCACGAA--UGUCAAUCUGGCUAUA---UGCUGGGAACUCCGU--(32)----CCUUCGUCCCAGUA--------------------------------AAAUGUUA---------------------------------UACUGGAAAGCAUCGAAGG-----------------UGCGGACAAUCAGCAGGGAAGUCCUCUACUUAUUAAU------AAAUUAACAUUAAAUCAUA--------GUUAAUAAGUAUGACCCCUCAACGACUA---------------------------------------------------CACGCCGGACAUCCUAA------------------------CAAU-----------------------UUAGGAUG-GUGAUAUAGUCUG-AA-CUACC-------UGGCGACU---------GGUAG--AGCUAUAUUCUUA---------------UUGA-----------UAAGAAUAAUAUAGC--UAUAGAUAAA------------AAAUAAUGA--------------UUUAUCUAUA--UAACA------CAUUUG-cgaugucggc
-......<<<<-<....--------[[[[.^->>>>.------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<....<<<<<--~~~~----<<<<<<<.<<<<<<--------------------------------........--------------------------------->>>>>>.....>.>>>>>>-----------------.>>>>>...>>>>>><<<..<<<...<<<<<<<<<<<------...................-------->>>>>>>>>>>.>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<------------------------....----------------------->>>>>>>>-......]]]]]][-<<-<<<<<-------........--------->>>>>--.<<<<<<<<<<<<---------------....----------->>>>>...>>>>>>>--<<<<<<<<<<------------.........-------------->>>>>>>>>>--...].------...>>.-]]]]].....
Cmo.cL2500 -uuuggcaccu-CAA---------ACAUCUG-GGGUUUUA----CUAUA----GAAA------UGUAGGAAUAACAAUUUGACUAUA---UGCUGGAAAUUCCGUUUAGUAU---CCUUAAAUAUAGUUAAGCA-----------------------------UUU------------------------------------UGCUCUAAAAUUUAAAAGG-----------------UGCGGGCAAUCAGCAGGGAAGUCCUCUACUUAUUAAU----------CAAUAAAAUAA-----------AUUAAUAAACAUUGAUCCCUCAACGACUA---------------------------------------------------CAUGUCAAAAACCUAAU------------------------AAAA----------------------AUUAGGUU--AUGAUAUAGUCUG-AA-CUAUUAG-------GCGA---------CUAAUAG--GCUAUCAUU-------------------AUAU------------------AAUAAUAGC-------------------------(776)----------------------------AAACA------UUGUUG-cgaugucggc
-......<<<<-<<.---------[[[[[>^->>>>....----<<<<<----....------>>>>>.........<<<<<<....---<<<<<<....<<<<<.......---<<<<<<<<.<<<...<<<<-----------------------------...------------------------------------>>>>>>>..>>>>..>>>>-----------------.>>>>>...>>>>>><<<..<<<......<<<<<<<<----------...........----------->>>>>>>>.....>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<------------------------....---------------------->>>>>>>>--......]]]]]][-<.-<<<<<<<-------....--------->>>>>>>--<<<<<.<<<-------------------....------------------>>>.>>>>>-------------------------~~~~~----------------------------...].------....>.-]]]]]]....
Chu.cL2500 -uuuggcaccu-CA------------AUCAG-GGGUC------GGUUCGUA--GCAA----UACGAACC--UGGCAAUUUGGCUAUA---UGCUGGAAUAUCCGU---------------------------------------------------------(141)------------------------------------------------------------------------GCGGACAAUCAGCAGGGAAGUUCUCUACUUAUGUG----------GUAUAACUUGUUA------------CACAUAAGCAUAACCCCUCAACGACUA---------------------------------------------------CACGCCGAACAUCCUA-------------------------ACUU------------------------UAGGAUG-AUGAUAUAGUCUG-AA-CUACUAG-------GCGA---------CUAGUAG--AUACUUUCGUUUG---------------AAUU--------------CAAACGACAGUAU-AAGGAAU-----------------(700)-------------------AUUCCUU-AUAACA------UAUUUG-cgaugucggc
-......<<<<-<.------------[[[.^->>>>.------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<....<<<<<---------------------------------------------------------~~~~~------------------------------------------------------------------------>>>>>...>>>>>><<<..<<<.....<<<<<<<<----------.............------------>>>>>>>>...>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<-------------------------....------------------------>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<.<<<<<<<---------------....-------------->>>>>>>.>>>>>-<<<<<<<-----------------~~~~~------------------->>>>>>>-....].------...>>.-]]]]......
Dpa.cL2500 -uuuggcaccu-C-------------AUCAUGGGGA-------GGUUUAUGU-GUUAA--GCAUGAAUC---CAUAAUUUAGCUAUA---UGCUGGAACAACCU-AUAUA----------------------------------------------------CAAAGA------------------------------------------------------------------UAUGUAAGGUCAAUCAGCAGGGAAGUAACU-----------------------UCAA--------------------------AGUUACCCUUCAACGACUA---------------------------------------------------CAUGCUAAGCAUCUUU------------------------UUAAAC-----------------------AGAGAUG-GUGAUAUAGUCUG-AA-CUUCUAG-------GGGA---------CUAGAAGACUAAAAAUUACAUUCAAAUCA-------(723)-UUUUGGU-UGAUUUGUAUUGGUUUUU--------------------------------------------------------UCUAACA------UAAUUG-cgaugucggc
-.......<<<-<-------------[[[..^>>>.-------<<<<<<<<<-.....-->>>>>>>>>---.....<<<<<<....---<<<<<<....<<<<-<<<<<----------------------------------------------------......------------------------------------------------------------------>>>>>.>>>>...>>>>>><<<..<<<<<<-----------------------....-------------------------->>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<------------------------......----------------------->>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>...<<<<<<<<....<<<<<<<-------~~~~~-.......->>>>>>>...>>>>>>>>--------------------------------------------------------.....].------...>>.-]]]]......
She.cL2500 -uuuggcaccu-CAA----------ACAUCG-GGGC-------UUUUUUAUA-GUAA---UGUAAAAAA----UGAAUUUAGCUAUA---UGCUGGAAUAUCCGUG-(13)---GCAGAGAUUAUAUGGUUGUAGA-----CUAAUUAAUUUAUAU-------AUA----------GUAUAAAUUAAUUAG-CACAC-ACAAUCGUGUAUCUAAAAUUGAC-------ACAUAUAGAUUGCGGACAAUCAGCAGGGAAGUGUAUAUAAAGA---------------UUUAUU-------------------UCUUUUAAUGACCCCUCAACGACUA---------------------------------------------------CACGCUGAAUAUCC---------------------------(24)--------------------------GGAUA-AAGAUAUAGUCUG-CU-CUUACAG-------GCAA---------CUGUAAG--UGACUU----------------------UAAU---------------------AAGUCA-GCAUA-------------------(782)---------------------UAUGU---AACA--------UUUG-cgaugucggc
-.......<<<-<..----------[[[[[^->>>.-------<<<<<<<<<-....--->>>>>>>>>----....<<<<<<....---<<<<<<....<<<<<<-~~~~---<<<<<<<<.<<<<<<<<<<...-----<<<<<<<<<<<<<<<-------...---------->>>>>>>>>>>>>>>-.....->>>>>>>>>>>>>>....>>>.>-------..........>>>>>>...>>>>>><<<..<<......<<<<<---------------......------------------->>>>>.....>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<---------------------------~~~~-------------------------->>>>>-......]]]]]][-..-<<<<<<<-------....--------->>>>>>>--<<<<<<----------------------....--------------------->>>>>>-<<<<<-------------------~~~~~--------------------->>>>>---..].--------....-]]]]]]....
Ptu.cL2500 -uuuggcaccu-CA-------------ACUG-GGGUC------UAUCAAU---GUGA-----AUUGAUAAUGCACAAGUUAGCUAUA---UGCUGGAAAAUCCGGAGGAU----CCAAAAACCCACCCUAAU-------------------------------UUU--------------------------------GUUAGGUCGG-AAAAGUUUUUUGG----------------UUCGGACAAUCAGCAGGG----------------------------AAGACCAUGUGC---------------------------CCCUCAACGACUA---------------------------------------------------CACGCUGACCUACUU------------------------AAAAAAA------------------------AAGUAG-AUGAUAUAGUCUG-AA-CUUCAAG-------GCGA---------CUUGAAG-GUAUUCAUUUUUCUGUGAACGAACUGC--AACUA--------GCAGCACGCGAAAAGGAACACGUUUUCGA--------------UUGCAU-----------------UCGAAAAU--UAACG------UCUUUG-cgaugucggc
-......<<<<-<.-------------[[[^->>>>.------<<<<<<<---....----->>>>>>>........<<<<<<....---<<<<<<....<<<<<<....----<<<<<<<<<<..<<<<<<-------------------------------...-------------------------------->>>>>>..>>-....>.>>>>>>>---------------->>>>>>...>>>>>><<<----------------------------............--------------------------->>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<------------------------.......------------------------>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>-...<<<.<<<<<<<<<<......<<<<--.....-------->>>>>>>>.>>>>>>>>>...<<<<<<<<--------------......----------------->>>>>>>>--...].------...>>.-]]..]]....
Tmu.cL2500 -uuuggcaccu-CAA------------AUCG-GGGUC------UAAAUGCG--GAAA----CGUGUUUA-UGU-GAAUUUAGCUAUA---UGCCGGAACCUCCGAGUAU-----CUUAGAAGAC--------------------------------------CAAAGU--------------------------------------GU-AAAACUUUCUGAG----------------UGCGGACAAUCGGCAGGGAAGUUGGACGGUACAUCC-------------AUUGU------------GGAUUGUUACAGGUCUAACCCCUCAACGACUA---------------------------------------------------AACGCUGAACACCCUU-------------------------(47)------------------------AGGGGUG-GUGAUAUAGUCUG-AU-CUUUUAA-------GCGA---------UUAAAAG--GCAGCUUCUAC-----------------(70)--------------GUAGAAAAGCUGC-GUUAAAUAGGU-------------(648)---------------ACCUGUUUAAU--UAACA-------UUAUG-cgaugucggc
-......<<<<-<..------------[[[^->>>>.------<<<<<<<<--....---->>>>>>>>-...-...<<<<<<....---<<<<<<....<<<<.....-----<<<<<<<<<<--------------------------------------......-------------------------------------->>-....>.>>>>>>>----------------..>>>>...>>>>>><<<..<<<<<<<.<<<<<<<<-------------.....------------>>>.>>.>>>..>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<-------------------------~~~~------------------------>>>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<<<<<-----------------~~~~-------------->>>>>..>>>>>>-<<<<<<<<<<<-------------~~~~~--------------->>>>>>>>>>>--...].-------..>>.-]]]]......
Pak.mL2500 -UUUGCGACCU-UAAU---------ACAUCG-GGGC-------UUUAAAAUA-GAAA--UGUUUUAAG---AAUGCAUUUGGCUAUA---UGCUGAGACCUCCGU--(20)---UUCACGAGGUUUAAGUGCUUGCAU------------------------UGUUAU------------AUGUAAGUUAACGUUUACGAACUUAAAUUGAGACUCAUGAA-----------------UGCGGACAAUCAGCAGGAAACCAAAUCUAUUGG---------------(286)----------------UCAAUAGAAAGUAGGAUCCUCAACGACUA---------------------------------------------------CAUGCCAAACAACCUA-------------------------AAGA------------------------UAGGUUG-AUGAGAUAGUCUA-ACGCUUGCAG-------GUAA---------CUGUGAG---AUAAAAG--------------------(81)--------------------CUUUUAU-AAAUACAU----------------(833)------------------AUGUAUUUACUAAUU--------CCUC-CGAUGUCGAC
-.......<<<-<...---------[[[[[^->>>.-------<<<<<<<<<-....-->>>>>>>>>---......<<<<<<....---<<<<<<....<<<<<--~~~~---<<<<.<<<<<<<<<<<<<<<<<<<------------------------......------------>>>>>>>>............>>>>>>>>.....>>>.>>>>-----------------.>>>>>...>>>>>><<<..<<...<<<<<<<<---------------~~~~~---------------->>>>>>>>.....>>.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<-------------------------....------------------------>>>>>>>-......]]]]]][-<..<<<<<<<-------....--------->>>>>>>---<<<<<<<--------------------~~~~-------------------->>>>>>>-<<<<<<<<----------------~~~~~------------------>>>>>>>>.....].--------..>.-]]]]]]....
Csp-1.cL2500 -uuuggcaccu-CAA------------AUCG-GGGCAAUAG--UCCA------GUAA--------UGGG--(16)--UUUGGCUAUA---UGCUGGGACAUCCG-----------------------------------------------------------(58)--------------------------------------------------------------------------GGAUUAUCAGCAGGGAAGUUUC------------------------UUCAA--------------------------GAUACCCCUCAACGACUA---------------------------------------------------CACGCCAUGUAUCCUU-----------------------UGCUUUUC----------------------AAGGAUA-AUGAUAGAGUCUG-AG-CUUUUAG-------GUAA---------CUAAAAG--GCCACUA-------------------UUGAGUGU------------------UAGUGGC-GUUAAAC------------------(34)-------------------GUUUAAU--UAACA-------CAUUG-cgaugucggc
-.......<<<-<..------------[[[^->>>......--<<<<------....-------->>>>--~~~~--<<<<<<....---<<<<<<...<<<<.-----------------------------------------------------------~~~~-------------------------------------------------------------------------->>>>..>>>>>><<<..<<.<<------------------------.....-------------------------->>.>>>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<-----------------------........---------------------->>>>>>>-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<-------------------........------------------>>>>>>>-<<<<<<<------------------~~~~------------------->>>>>>>--...].-------..>>.-]]]]......
Csp-2.cL2500 -uuuggcaccu-CAA------------AUCG-GGGCAAUAG--UCCA------GUAA--------UGGG--(16)--UUUGGCUAUA---UGCUGGGACAUCCG-----------------------------------------------------------(58)--------------------------------------------------------------------------GGAUUAUCAGCAGGGAAGUUUC------------------------UUCAA--------------------------GAUACCCCUCAACGACUA---------------------------------------------------CACGCCAUGUAUCCUU-----------------------UGCUUUUC----------------------AAGGAUA-AUGAUAGAGUCUG-AG-CUUUUAG-------GUAA---------CUAAAAG--GCCACUA-------------------UUGAGUGU------------------UAGUGGC-GUUAAAC------------------(34)-------------------GUUUAAU--UAACA-------CAUUG-cgaugucggc
-.......<<<-<..------------[[[^->>>......--<<<<------....-------->>>>--~~~~--<<<<<<....---<<<<<<...<<<<.-----------------------------------------------------------~~~~-------------------------------------------------------------------------->>>>..>>>>>><<<..<<.<<------------------------.....-------------------------->>.>>>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<-----------------------........---------------------->>>>>>>-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<-------------------........------------------>>>>>>>-<<<<<<<------------------~~~~------------------->>>>>>>--...].-------..>>.-]]]]......
Cco.cL2500 -uuuggcaccu-CAA------------AUCG-GGGCAAUCG--UCCA------GUAA--------UGGG--(16)--UUUGGCUAUA---UGCUGGGACAUCCG-----------------------------------------------------------(56)-------------------------------------------------------------------------CGGAUUAUCAGCAGGGAAGUUUC------------------------UUCAA--------------------------GAUACCCCUCAACGACUA---------------------------------------------------CACGCCAUGUAUCCUU-----------------------UGCUUUUC----------------------AAGGAUA-AUGAUAGAGUCUG-AG-CUUUUAG-------GUAA---------CUAAAAG--GCCACUA-------------------UUGAGUGU------------------GAGUGGC-GUUAAAC------------------(55)-------------------GUUUAAU--UAACA-------CAUUG-cgaugucggc
-.......<<<-<..------------[[[^->>>......--<<<<------....-------->>>>--~~~~--<<<<<<....---<<<<<<...<<<<<-----------------------------------------------------------~~~~------------------------------------------------------------------------->>>>>..>>>>>><<<..<<.<<------------------------.....-------------------------->>.>>>>>...[.[[[[.---------------------------------------------------...>>>>>>.......-----------------------........----------------------.......-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<<<<-------------------........------------------>>>>>>>-<<<<<<<------------------~~~~------------------->>>>>>>--...].-------..>>.-]]]]......
Cha_vu.mL2500 -uuuggcaccu-CA-------------UUUG-GGGUA------CUUACACA--GUAA----UGUGUAGG--CGCGAAGCUGGAUAUA---UGCUGGGAACUCCGAGUAU-----CCGACCA---------------------------------------AAUGAAAAA---------------------------------------------UGUGUCGG----------------UGCGGACAAUCAGCAGGGAAGGAAGUCAUACAUGUG-------------UUGA------------------UACAUGCGCUGCGCCCCUCAACGACUA---------------------------------------------------CACGCCAGACAUCCC-------------------------UGCUU-------------------------GGGAUG-AUGAUAUAGUCUG-AA-CUUCGUG-------GCGA---------CACGAAG--GCUACAUUGAAACCA-------------(130)----------------UGGUUUCAAU----------------------------------------------------------UAACA------CAAUUG-cgaugucgac
-......<<<<-<.-------------.[[^->>>>.------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<....<<<<.....-----<<<<<<<---------------------------------------.........--------------------------------------------->>.>>>>>----------------..>>>>...>>>>>><<<.....<<<....<<<<<<-------------....------------------>>>>>>.>>>....>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<-------------------------.....------------------------->>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>--.....<<<<<<<<<<-------------~~~~~---------------->>>>>>>>>>----------------------------------------------------------...].------...>>.-]]].......
Nsp.cL2500 -uuuggcaccu-CAAU------------UCG-GGGC-------AAUUUUCCA-GUAA---UGGAAAAUU--CAAGAAUUUGGCUAUA---UGCUGGGACAUCCGGA--------------------------------------------------------(106)-----------------------------------------------------------------------UCCGGACUAUCAGCAGGGAAGUCU-------------------------AAGA----------------------------AGACCCCUCAACGACUA---------------------------------------------------CAUGCCAAACAUCCUU-------------------------AUAG------------------------AAGGAUG-AUGAUAGAGUCUG-AA-CUUCUAA-------GCAA---------CUAGAAG--GCCA----------------------UUCAAGAU---------------------UGGC-GUUAAAC-----------------(101)-------------------GUUUAAU--UAACA-------CUUUG-cgaugucggc
-.......<<<-<...------------[[^->>>.-------<<<<<<<<<-....--->>>>>>>>>--......<<<<<<....---<<<<<<....<<<<<<--------------------------------------------------------~~~~~----------------------------------------------------------------------->>>>>>...>>>>>><<<..<<<<-------------------------....---------------------------->>>>>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<<<<-------------------------....------------------------>>>>>>>-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>--<<<<----------------------........--------------------->>>>-<<<<<<<-----------------~~~~~------------------->>>>>>>--...].-------..>>.-]]].......
Slu.mL2500 -uuuggcaccu-UGA--(210)------UCG-GGGAAUU----UUAAUA----GAAA------UAUUAA-CUUAGAAAUUGGCUAUU---UGCUGAAACUUCCUUAGAGC--UUUUGAAAAUAUUUAAGAAAAAUAUAAUA----------------------(59)----------------------UAUUUUAUUUUAUUUAAAU-UUAAAAUUCAAAA--------------UGAUUGGGAAAUUGGCAGGGAAGUUUUAAUUUAGAUAA-------------UUAG-----------UUAUCUUUAACAGAUUAAAACCCCUCAACGAUCA---------------------------------------------------CACGCCAACAUCCA---------------------------(28)--------------------------UGGAUGAAGAUAUGAGCUA-AA-UUUAUAU-------GAAA---------AUAUAGA------------------------------------------------------------------------------------------------------------------------UGUA-------AAUUG-cga-------
-.......<<<-<<<--~~~~~------^^^->>>....----<<<<<<----....------>>>>>>-........<<<<<....---<<<<<<...<<<<<......--<<<<<<<...<<<<<<<.<<<<<<.<<<<----------------------~~~~---------------------->>>>.>>>>>>.>>>>>>>-......>>>>>>>--------------.....>>>>>.>>>>>><<<..<<<<<<<<<<<<<<<<-------------....----------->>>>>>.....>>>>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>.<<<<<---------------------------~~~~-------------------------->>>>>.......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>------------------------------------------------------------------------------------------------------------------------..].-------..>>.-]]]-------
Aae.mL2500 -uuuggcaccu-U-----(91)-UUGACAUCGGGGGAUC----UUAAUA----GAAA------UAUUAA-UUUAAAAGUUGGCUAUA---UGCUGGAACCCCCUUAGAG-----CUUUUGGUACUAAUUUAGU------------------------------AAUA-------------------------------ACUAAAUAGU-GAAAAUUCAAAAG----------------AUUGGGUAAUCAGCAGGGAAGUUUUAUAUUUAGAUG-------------UAAGC-----------CAUUUAUGAUAAUAUAAAACCUCUCAACGAUCA---------------------------------------------------CACGCCAAUACCUAGAGCUUAUAU-----------------UUU------------AUGUACUCUAAAUACUAGGUAAAGAUAUGAUCUA-AA-CCUAUAC------UGAAAU--------GUUAGGA--------------------------------------------------------------------------------------------------------------------------UA--------AAUG-cgaugucgac
-.......<<<-<-----~~~~-[[[[[[[[^>>>....----<<<<<<----....------>>>>>>-.......<<<<<<....---<<<<<<.<<<<.....<<.-----<<<<<<<<<<<<.<<<<<<------------------------------....------------------------------->>>>>>>>>>-....>.>>>>>>>----------------.>>>>>>..>>>>>><<<..<<<<<<<<<<<<<<<<-------------.....----------->>>>>>....>>>>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<..<<<<<-----------------...------------>>>>>..>>.....>>>>>>.......]]]]]][-<.-<<<<.<<------......-------->>>>>>.--------------------------------------------------------------------------------------------------------------------------].--------..>.-]]]]]]]]].
Sce.m.COB,3 -gagguggguu-UAAUAUA---------GAG-GAUCC------AUAUUAUA--GUAA----UAUAAUAU-UAAAUAAAUCUGUUUUA---UGCUGAAAUAUCUUCAUUUGAAU-AAUAAAUUACUAUAUUA----------UUCAA--UUAAU-----UAUUUAUAAUAAUA-----UAAU-----UUGAA-AUAAAAAUAAUAUAGU-UAAAAUAUUUAUU-------------AUAAGAAGAAAAUUAGCAGUAAUUAAUAUAUAU-------------------AUAU-------------------AUAUAAAAUUAAUUAUUCAGAGACUUUAUAGUUAUUAUAUAAAUAAUACUAUUAUUUAUGAUAAAAAUCAUAAAUUAAACACAGAUAAUCCUAUUUA--------------------(1322)-------------------UAAAUAGGAUU-AAGAUAUAGUCCG-AA-CAAUAUA-------GUGA---------UAUAUUG-AUAAUAG-----------------UUUUCAAAUAUGUAA----------------CUAUU---------------------------------------------------------UAAACA-----UUAAAAG-cucaguaucu
-.....<<<<<-<......---------[[^->>>>>------<<<<<<<<--....---->>>>>>>>-.......<<<<<<....---<<<<<<....<<<<<........-<<<<<<<<<<<<<<<..----------<<<<<--.....-----<<<<......>>>>-----....----->>>>>-.........>>>>>>>-....>.>>>>>>>-------------....>>>>>...>>>>>><<<<<<<<<.<<<<<-------------------....------------------->>>>>..>>>>>>>>>...[.[[[[..<<<<<.<<<<<....>>>>>>>>>>.<<<<<<<<<....>>>>>>>>>.....>>>>>><<<<<<<<<<<--------------------~~~~~~------------------->>>>>>>>>>>-.......]]]]][-..-<<<<<<<-------....--------->>>>>>>-..<<<<<-----------------...............---------------->>>>>---------------------------------------------------------....].-----.......-]]].......
Sdo.m.COB,4 -gagguggguu-UAAUAUA---------GAG-GAUCC------AUAUUAUA--GUAA----UAUAAUAU-UAAAUAAAUCUGUUUUA---UGCUGAAAUAUCUUCAUUUGAAU-AAUAAAUUACUAUAUUA----------UUCAA--UUAAU-----UAUUUAUAAUAAUA-----UAAU-----UUGAA-AUAAAAAUAAUAUAGU-UAAAAUAUUUAUU-------------AUAAGAAGAAAAUUAGCAGUAAUUAAUAUAUAU-------------------AUAU-------------------AUAUAAAAUUAAUUAUUCAGAGACUUUAUAGUUAUUAUAUAAAUAAUACUAUUAUUUAUGAUAAAAAUCAUAAAUUAAACACAGAUAAUCCUAUUUA--------------------(1240)-------------------UAAAUAGGAUU-AAGAUAUAGUCCG-AA-CAAUAUA-------GUGA---------UAUAUUG-AUAAUAG-----------------UUUUCAAAUAUGUAA----------------CUAUU---------------------------------------------------------UAAACA-----UUAAAAG-cucaguaucu
-.....<<<<<-<......---------[[^->>>>>------<<<<<<<<--....---->>>>>>>>-.......<<<<<<....---<<<<<<....<<<<<........-<<<<<<<<<<<<<<<..----------<<<<<--.....-----<<<<......>>>>-----....----->>>>>-.........>>>>>>>-....>.>>>>>>>-------------....>>>>>...>>>>>><<<<<<<<<.<<<<<-------------------....------------------->>>>>..>>>>>>>>>...[.[[[[..<<<<<.<<<<<....>>>>>>>>>>.<<<<<<<<<....>>>>>>>>>.....>>>>>><<<<<<<<<<<--------------------~~~~~~------------------->>>>>>>>>>>-.......]]]]][-..-<<<<<<<-------....--------->>>>>>>-..<<<<<-----------------...............---------------->>>>>---------------------------------------------------------....].-----.......-]]].......
Eni.m.COB,1 -gaggagguuu-AUAC---------ACAGA-UGAACC------ACAAUGCG--GUGA----CGUAUUGU--UAAAAAUCCUGCUUAA---UGCUGGAAAAUCCCCAAUCUUAGGAUUUGCAUACGACUUAUU----CUUU-AUAAU-----------------AGU--------------------AUUAU-------UAAUAGGCGU-GAAAAUUGCAAU-------------GACACGGGGAAAAUCAGCAGGGGUGAGAAGU---------------------UUACAU--------------------ACUUCAGAAGCCUCUCAGAGACUA---------------------------------------------------CAUGCAGGAGAUCUU-------------------------(755)-------------------------GAGAUC-AUGAUAUAGUCCG-AU-CAAUAAA-------GAAA---------UUUAUUGCGUAUAGUAAGAGGAUUUAAUA--------UUUA---------UAUUAAAUCUGUAACUAU----------------------------------------------------------CAACA------UAAAUG-cucuguaaau
-.....<<<<<-<<..---------[[[[^->>>>>>------<<<<<<<<--....---->>>>>>>>--......<<<<<<....---<<<<<<....<<<<<.........<<<.<<<<<<<.<<<<<<----....-<<<<<-----------------...-------------------->>>>>-------.>>>>>>>>>-....>.>>>>>>-------------.....>>>>>...>>>>>><<<<<..<<<<<---------------------......-------------------->>>>>....>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<-------------------------~~~~~------------------------->>>>>>-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>...<<<<<....<<<<<<<<<<--------....--------->>>>>>>>>>...>>>>>----------------------------------------------------------...].------...>>.-.]]]]]....
Pan.m.COB,1 -uauagagcau-AUGUA------CUCGUAAU-GUGCUCU---------------------------------UUAAAUCGGGUUAAAU--UGCUGAAAACCCCCCCCU------------------------------------------------------GAUUAUC---------------------------------------------------------------------AGGGGACAAUCAGCAGGUAAGUUGAUCGGCAU-------------AGGGAUACCCUAA--------------AUGUCGAUUAUCAUCUUCAGAGACUA---------------------------------------------------CACACUUGACACC---------------------------UAUCUU--------------------------GGUG-AUGAUAUAGUCCA-AA-UUUUACU-------CGAA---------AGUAAAA-----------------------------------------------------------------------------------------------------------------------CAAGA(2303)---ACG-auuaugagag
-...<<<<<<<-<<...------[[[[[[^^->>>>>>>---------------------------------.....<<<<<<.....--<<<<<<.....<<<..<<------------------------------------------------------.......--------------------------------------------------------------------->>>>>....>>>>>><<...<.<<<<<<<<<<-------------.............-------------->>>>>>>>>>.>..>>...[.[[[[[---------------------------------------------------...>>>>>><<<<---------------------------......-------------------------->>>>-......]]]]]].-<.-<<<<<<<-------....--------->>>>>>>-----------------------------------------------------------------------------------------------------------------------.....~~~~~~---.>.-]]]]]]]]..
Pan.m.COB,3 -ccugaaugau-AAAGUAA-----AAUAAAU-GUCAUUC---------------------------------UAAAAUUUCGCGAAC---UGCUGGGAACCCUUUUU-----------------------------------------------------AAUUUAAAAUU-----------------------------------------------------------------AAAGACGACAAUCAGCAAGAAAGCCUUUUAUUAA-----------GCUAGUAUAUACUAAG--------------UUAAUUAAGGAAUCUUCAGAGGCUA---------------------------------------------------UGCACGAGACAAUUAAAGGC----------------GCUUUGGAGCUCGC----------------GCCUUAAUUG-AAGAGAUAGUCCG-AU-CAUGGUA-------GUGA---------UACUAUG-------------------------------------------------------------------------------------------------------------------AAUUUAACA-(762)---UUG-auuuauuacc
-...<<<<<<<-<......-----[[[[[[^->>>>>>>---------------------------------.....<<<<<.<...---<<<<<<....<.<<<<<-----------------------------------------------------...........----------------------------------------------------------------->>>>>.>....>>>>>><<<...<<<<..<<<<<-----------................-------------->>>>>.>>>>..>>>...[.[[[[[---------------------------------------------------..>.>>>>><<<<<.<<<<<----------------..............---------------->>>>>>>>>>-......]]]]]][-<.-<<<<<<<-------....--------->>>>>>>-------------------------------------------------------------------------------------------------------------------.......].-~~~~~---.>.-]]]]]]]...
Pan.m.COX1,7 -uuuagccggu-AAGUUUAUAGAA--AUUGU-GCCGG---------------------------------GUUUAAAUCUGGAAAAU---UGCUGGGAAUUGUGGU---------------------------------------------------------UAUAU----------------------------------------------------------------------ACCACACAAUCAGCAGGAAACCUAUCAAGU-------------------UUGU--------------------ACUUUUUGGGUAUCUUCAGAGGCUA---------------------------------------------------UACGUCAGAUUUUAUUUU----------------------(948)--------------------AUUAAAUAAUU-AAGAUAUGGCCCC-AA-CAUACAC-------GUGA---------GUGUAUGAGAAUCUG----------------------(67)----------------------CAGAU----------------------------------------------------------CAAGA(1034)---UUG-gcaauaacua
-.....<<<<<-<...........--[[[[^->>>>>---------------------------------.......<<<<<.....---<<<<<<....<<<<<<---------------------------------------------------------.....---------------------------------------------------------------------->>>>>>...>>>>>><<<.<<<<<..<<<<-------------------....-------------------->>>>..>>>>>.>>>...[.[[[[[---------------------------------------------------....>>>>>..<<<<<<<----------------------~~~~~-------------------->..>>>>>>..-......]]]]]][-<<-<<<<<<<-------....--------->>>>>>>...<<<<<----------------------~~~~---------------------->>>>>----------------------------------------------------------...].~~~~~~--->>.-]]]]].....
Pma.m.COX1,3 -auccagaggu-UA--------AAAAUAUAG-GCCUCU------------------------------------UAACGUUACUAUA---UGCUGAGACUGCUUCGUUACUAAGUUUUAAAUACU------------UCA-UCAAUAGUA---------CAACAUUAUAUU----------UACUUAAUGA-----------CAUAGUAAAAAAGUUAAAAC--------------AAAGAAGUAAAUCAGCAGGUUAUAUUCUGAUUU---------------CAUCGAAAAGU----------------AAAUCGGAUAUAACCUCAGAGACUU---------------------------------------------------UACGUAACGGAAUUGUAGUA--------------------(785)--------------------UACUACAAUUU-AAGAUAAAGUCCU-AA-CAAGGAU------AUAAAA--------GUUCUUGAGUGUUAGAUAUAACAAAUAUAUAU-----AUAU-------AUAUAUAUUGUUAUUCUAAU----------------------------------------------------------CAAAA-------UUUAG-uuauauuuua
-....<<<<<<-<.--------[[[[[[[[^->>>>>>------------------------------------...<<<<<<....---<<<<<<...<<<<<<........<<<<<<<.<<<<------------...-<<<..<<<<---------............---------->>>>...>>>-----------...>>>.....>.>>>>>>>--------------...>>>>>>..>>>>>><<<<<<<<<<.<<<<<---------------...........---------------->>>>>>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<--------------------~~~~~-------------------->>>>>>>>>>>-......]]]]]][-<.-<<<<<<<------......-------->>>>>>>...<<<<<<.<<<<<<<.<<<<<<<-----....------->>>>>>>>>>>>>>>>>>>>----------------------------------------------------------...].-------..>..-]]]]]]]]].
Eni.m.COX1,3 -acccagaggu-CA--------AAAAUAUAG-GCUUCU------------------------------------UAACGUUGCUGUA---UGCUGGGACCACUUCAAUAUUAAGUUUUAAAUACUCAA-------------UC-------------------UUAAAU---------------------GA-----------CACAGU-AAAAAAGUUAAAAC-------------GAUGAAGUAUAUCAGCAGGUAACAUU-------------------------UUA---------------------------AAUGGAACCUCAGAGACUU---------------------------------------------------UAUGCAACGAAAUUGUAGUA--------------------(827)--------------------UACUACAAUUU-AAGAUAAAGUCCU-AA-CAAGGAU------GUUUA---------AUUCUUGAGUAUUAA----------------------(37)----------------------UUAAU----------------------------------------------------------CAAAA------UUUUUG-uuauauuuua
-....<<<<<<-<.--------[[[[[[[[^->>>>>>------------------------------------...<<<<<<....---<<<<<<....<<<<<<.......<<<<<<<.<<<<...-------------<<-------------------......--------------------->>-----------...>>>-....>..>>>>>>>-------------..>>>>>>...>>>>>><<<..<<<<-------------------------...--------------------------->>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<--------------------~~~~~-------------------->>>>>>>>>>>-......]]]]]][-<<-<<<<<<<------.....--------->>>>>>>...<<<<<----------------------~~~~---------------------->>>>>----------------------------------------------------------...].------...>>.-]]]]]]]]].
Eni.m.COX1,2 -auuagccggu-AAACAUAGAAA-----ACU-GCCGGC---------------------------------AUUAAAUUUGGCUAUA---UACUGGAAACUGUUAUA----------------------------------------------------UAUUUAUAGAUA------------------------------------------------------------------UAUAUCACAAUCAGUAGGAAACCAUCUAGGU-------------------UUAA--------------------ACCUAAAUGGGUUCUUCAGAGACUA---------------------------------------------------UACGCCAAAGUAUUUUCA----------------------(851)----------------------UGAAAAUAU-AAAAUAUAGUCCA-AA-CAAUUUC-------GAGA---------GAAAUUGAGUGUCUA----------------------(78)----------------------UAGAC----------------------------------------------------------CAAUA-----AUAAUAG-gguauuacua
-....<<<<<<-<..........-----[[^->>>>>>---------------------------------......<<<<<<....---<<<<<<....<<.<<<<----------------------------------------------------............------------------------------------------------------------------>>>>.>>...>>>>>><<<<.<<<<.<<<<<-------------------....-------------------->>>>>.>>>>.>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<----------------------~~~~~---------------------->>>>>>>>>-......]]]]]][-.<-<<<<<<<-------....--------->>>>>>>...<<<<<----------------------~~~~---------------------->>>>>----------------------------------------------------------...].-----....>..-]]].......
Sja.m.COX1,2 cauccugaggu-U----(2272)---UAUAG-GCCUCG------------------------------------UAAUGUUGCUAUA---UACUGGAACAUCCUCAA------UAAAU----------------------------UUAAAAUACUCCUUAACAAAUGUUAAUAAAGUAACAA----------------------------------AGUUUA----------AAUCAAGGGGACAAUCAGUAGGUAACUAUUUAAUU------------------AAUAGAA-------------------AAUUAAUAGGAACCUCAGAGACUA---------------------------------------------------CACGCAACAAGAUUAC------------------------(706)------------------------GUAAUCU-AAGAUAUAGUCCG-AA-CAAAGGU------CAUAA---------GCCUUUG-AGAAUUAAAAAGAAUAGAUUAAUU-----AUUG-------AAUUAACUAUUUUAUUAAUC-----------------------------------------------------------AACA------GAAUUG-uuauauucua
.....<<<<<<-<----~~~~~~---[[[[^->>>>>>------------------------------------...<<<<<<....---<<<<<<....<<<<<..------<<<<<----------------------------.....................................---------------------------------->.>>>>----------.....>>>>>....>>>>>><<<..<<<<<.<<<<------------------.......------------------->>>>>>>>>..>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<------------------------~~~~~------------------------>>>>>>>-......]]]]]][-<<-<<<<<<<------.....--------->>>>>>>-.<<.<<<<..<<<<<<<.<<<<<<-----....------->>>>>>>>>>>>>.>>>>>>-----------------------------------------------------------..].------...>>.-]]]]].....
Spo.m.COX1,2 -auccagaggu-CAAUUUA--------AUAG-GCCUCU------------------------------------UAACGUUGCUAUA---UGCUGGAACUACUUGA-(21)--UGUUUUAAAUACUCC-------------AAGAAAAACAC----------CAGAUUA----------GUGUUUAUUUUU-----------AUAGUA-AAAAUGUUAAAACA--------------AUUAAGUAUAUCAGCAGGUAACCUU------------------------UUGAAU-------------------------AAGGGAACCUCAGAGACUU---------------------------------------------------UACGCAACGAAAUCACAACAAA------------------(770)------------------UUUGUUGAGAUUU-AAAAUAAAGUCCU-AA-CAAGGGU------AUAAA---------GCUUUUGAGUGUUAAAAAGAAUAAAUCACC------UUUUG-------GGUGAUUUUUUUUCAUUAAC----------------------------------------------------------CAAAA-----UUUAUUG-uuauauuuua
-....<<<<<<-<......--------[[[^->>>>>>------------------------------------...<<<<<<....---<<<<<<...<<<<<<<-~~~~--<<<<<<<<<<<<<..-------------<<<<<<<<<<<----------.......---------->>>>>>.>>>>>-----------..>>>>-....>.>>>>>>>>--------------.>>>>>>>..>>>>>><<<.<<<<<------------------------......------------------------->>>>>.>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<<<<<<<<<------------------~~~~~------------------>>>>>>>>>>>>>-......]]]]]][-<<-<<<<<<<------.....--------->>>>>>>...<<<<<..<<<<.<<<<<<<<------.....------->>>>>>>>.>>>>..>>>>>----------------------------------------------------------...].-----....>>.-]]]]......
Cgl.m.COX1,2 -gauggacugu-UUUGGAAU-------UAAA-GCAGUCU---------------------------------UUAAACUCAACUCGA---UGCGGGAAAAUCUC---(17)GUCUAAUAUCUACGGCUG---------------------------------UUUAUU---------------------------------CAAGUGU-AAAAAUGAUGUUAGAU---------------GAGACAAUCCGCCUGCGAAUAU-----------------------CUAAAAA------------------------AUAUGUCGUAUCAGAGACUU---------------------------------------------------AAUGUUGAGCCUUCUUUUAAUUUUC---------------(810)--------------GAAAAUUAAAAAAAGUG-AAGGUAUAGUCCG-AU-CUUUGAU-------GUGA---------AUCAAAGUGUAUAACGAGAGUUUCUUGUG--------(59)--------CACAAGAAAUGGGGUUAUC-----------------------------------------------------------AACA------AAAAUG-uuauccaccu
-...<<<<<<<-<<<<....-------^^^^->>>>>>>---------------------------------.....<<<<<<....---.<<<<<....<<<<---~~~~<<<<<<<<<<<<<<..<<---------------------------------......--------------------------------->>..>>>-....>.>>>>>>>>>>--------------->>>>...>>>>>.<<<<<<<<<-----------------------.......------------------------>>>>.>>>>>...[.[[[[.---------------------------------------------------...>>>>>><<<<.<<<<<<<<<<<---------------~~~~~-------------->>>>>>>.>>>>>>>.>-.......]]]]][-<<-<<<<<<<-------....--------->>>>>>>.<.<<<<<....<<<<<<<<<<--------~~~~-------->>>>>>>>>>...>>>>>>-----------------------------------------------------------..].------...>>.-]]]]......
Ncr.m.ND5,2 -gauggaaggu-UUUUUU-------AGUAGG-GCUUUCC---------------------------------UUAAACUUCACUAUA---UGCAGGAACAUCCCGUUUUAA---GUCUUGGUCCACU--------------UAGAU------------------UUA-------------------GUCUA------------UUCGG-AAAAAUCCAAGAU----------------CAGGGACAAUUUGCAGGAAAUUC-------------------------GAUAA---------------------------GAAGUUCCUCAGAGAUUA---------------------------------------------------CAAGUGAAGCUUUUAUGU----------------------(832)----------------------ACAUAAAUG-AAGAUAUAGUCCG-AU-CAGUUAA-------GUAA---------UUAACUGCGUAUUCC----------------------(72)----------------------GGAAU----------------------------------------------------------CAACA----UAAUUUUG-ccuacuccug
-...<<<<<<<-<<....-------[[[[^^->>>>>>>---------------------------------.....<<<<<<<...---<<<<<<....<<<<.......---<<<<<<<<<<...--------------<<<<<------------------...------------------->>>>>------------...>>-....>.>>>>>>>----------------..>>>>...>>>>>><<<<.<<<-------------------------.....--------------------------->>>.>>>>...[.[[[[[---------------------------------------------------..>>>>>>><.<<<<<<<----------------------~~~~~---------------------->>>>>>>.>-......]]]]]][-<.-<<<<<<<-------....--------->>>>>>>...<<<<<----------------------~~~~---------------------->>>>>----------------------------------------------------------...].----......>.-]]]]]]....
Cmo.m.psbA,2 -caauacgcuu-C-------------AAAUG-GGGC-------CGUUAGAUA-GAAA--UAUCUAAAUG----AACAUCUGGCUGUA---UGCUGGGAACUCC----(65)--UAUAAAACGACUUAUUUA------------------------------AGUUUUAAG-----------------------------UAAAUAAGU-AAAACUGUUUUAUA----------------ACGGACAAUCAGCAGGGAAGUCCUAUGACUU-----------------UAA-----------------------AAGUUAUGACCCCUCAACGACUA---------------------------------------------------CACGCCGGACACCCAAUAAA---------------------(54)----------------------UUUAGGGUG-AUGAUAUAGUCUACUA-CUUAUG--------UAAA----------CAUAAG(37)UUAAAAU------------------(1402)------------------AUUUUAA---------------------------------------------------------------------UAAAAAG-cauuuaacaa
-......<<<<-<-------------[[[[^->>>>-------<<<<<<<<<-....-->>>>>>>.>>----....<<<<<<....---<<<<<<....<<<----~~~~--<<<<<<<<<<<<<<<<<<------------------------------.........----------------------------->>>>>>>>>-....>.>>>>>>>>----------------..>>>...>>>>>><<<..<<<..<<<<<<<-----------------...----------------------->>>>>>>>>>>>>...[.[[[[[---------------------------------------------------...>>>>>><<<<<..<<<<---------------------~~~~---------------------->>>>>>>>>-......]]]]]]....-<<<<<<--------....---------->>>>>>~~~~<<<<<<<------------------~~~~~~------------------>>>>>>>---------------------------------------------------------------------.......-]]]]].....
P1 P10 P1' P2 P2' P3 P4 P5 P5a P5b P5b' P5a' P5' P4 P6 P6' P7 P7.1 P7.2 P3' P8 P8' P7' P9.0 P9 P9' P9.1 P9.1' P9.2 P9.2' P9.0' P10'