P1                 P10   P1'        P2                                  P2'            P3        P4       P5                                     P5a                                      P5a'                                              P5'      P4' P6     P6a                             P6a'      P6'     P7         P3' P8                                      P8'        P7' P9.0 P9               P9.1       P9.1'                                                                 P9.0'  P10'
Rsp.mL796           uuaucgaacu--AA----------AUUGACUGGUUCGA---------------------------------------------------AAAUAUAUGAUAAAAUAUUGAAAUU-------------------------------------------------------AAUU-------------------------------------------------------------------------AAAUC-AAUAAGAUUAAUUAAA--------AAUCAAUAAG--------AUUAAUAAAAAUCUUUAACGACUAAACAUCAUAAUCGA---------------AAUA---------------UCGAUAAAAUAUAGUCUUAAUUAAU--(113)-----------------------------------------------------------------------------------AUUAAUUAG--agucaauagc
                    ...<<<<<<<--<.----------[[[[[[^>>>>>>>---------------------------------------------------.....<<<<<<....<<<<<<..<<-------------------------------------------------------....------------------------------------------------------------------------->>.>>->>>><<<<<.<<<<<<--------..........-------->>>>>>...>>>>>...[.[[[[[...>>>>>><<<<<---------------....--------------->>>>>......]]]]]]<<<<<<<<--~~~~~----------------------------------------------------------------------------------->>>>>>>>.--]]]]]]]...
Spu.mL1065          aaugugagcu--CAA-----------UUCCGGGCUCCAU--------------------------------------------------AUAAGAUCUAAUUA-UGCUGGAAUCUA-----------------------------------------------------UUUAU---------------------------------------------------------------------UAGAAAUC-AGCAGGUGGU----------------UUAAUU------------------AUCACCUCAACGACUAUUAUUAGAUCUAAAAUUAGUAUCAUUGUUUU-AGCAAUAGAGUUAUUGUAAUGUAUUUAUAGUCUUGGUAAUCC-(162)-GGAU-GAUGACCUCAGGUCAUC------------------------------------------------------------UGAAAUCAG--uggaagcagc
                    .<<<.<<<<<--<..-----------[[[[^>>>>>>>>--------------------------------------------------.....<<<<<<...-<<<<<<..<<<<-----------------------------------------------------.....--------------------------------------------------------------------->>>>..>>->>>><<<<<<----------------......------------------>>>>>>...[.[[[[[...>>>>>>......................-...........................]]]]]]<<<<.<<<<-~~~~~->>>>-<<<<<<<...>>>>>>>------------------------------------------------------------....>>>>.--]]]]].....
Aae.mL1066          aagugagccu--GGAUUAUAAAAAGACUGCUGGGCUC---------------------------------------------CAAAUCAAAAAACUGGGCUAUUUGCAAGAAACCCCUAAAG-----------------------------CUUUAAGUACUUU----AAAAAA----AAAGUAAUAAUCUUAAAG-------------------------------------AUAAUACAAUGGGCAAUU-UGCAGGAAACC----------------(66)-------------------GGAUCCUCAACGACUACACGCCUAGAAUAAUUUA----------(106)-----------UAAAUUAUUAUGACAUAGUCUAAUCCAUUGUGAGAGCAAUGG----------------------------------------------------------------------(1542)GGGAUACAUG--ggcagucgcu
                    ....<<<<<<--<<..........[[[[[^^>>>>>>---------------------------------------------............<<<<<<....<<<<<<...<<<......-----------------------------<<<<<<<<<<<<<----......---->>>>>....>.>>>>>>>-------------------------------------..........>>>...>>->>>><<<..<<----------------~~~~------------------->>.>>>...[.[[[[[...>>>>>><<<<<<<<<----------~~~~~----------->>>>>>>>>......]]]]]].<<<<<<<<<....>>>>>>>----------------------------------------------------------------------~~~~~~.......>.>--]]]]]]]...
Apa.mL1773          agagugcgac--UAACAC---------AAUGGUCCACU---------------------------------------------------AUAAACUUCGCUAUAUGCGGGAACCUCCUUAGAG----------------------------CCCACGGGACUAGACAG-GAAUU-CUGUCAGUAACACAACGUUGGG-------------------------------------------AUUGGAAAAUC-CGCAGGAAACUAACUCAUAC-------AUA---------GUAUGAUAGUAGGAUCCUCAGAGACUACACGCGAAGCAAUCU--------------GUGA--------------AGAUUGGAGAUAUAGUCCGCUCUUAGAUCAAAAUCUAAGCUGGUUUUGUGAUGCUAUAGUGGUUGUACUGCUUGCAUUAUAAAGCUGGAGGUUUAAUGGUGCAUCUCCAUUAGACUAACAUCUGG--uguuuaucaa
                    ..<<<<.<<<--<<....---------[[^^>>>>>>>---------------------------------------------------.....<<<<<<....<<<<<<....<<<......----------------------------<<<<<<.<<<<.<<<<<-.....->>>>>>>>....>..>>.>>>>-------------------------------------------...>>>...>>->>>><<<..<<<..<<<<<<-------...--------->>>>>>...>>>..>>>...[.[[[[[...>>>>>><<<<<<--------------....-------------->>>>>>......]]]]]].<.<<<<<<<....>>>>>>><<<<<<<<<<<<<<<...<<<<<<...>>>>>>.>>>>>>>>>>>>>>>.<<<<<<<<<<.......>>>>>>>>>>.......>.--]]]]......
Slu.mL1974          uaucaauaau--AU---(291)---CGUUAUGUUAUUG---------------------------------------------------UAAAAUAAUCCUAUUUGUUGGAAAUACUUUAU----------------------------AAAUAUAUAAUACUU-----(39)-----AAGUAAAAAUUUAUAUAUUU--------------------------------------------UAGUCAACC-AACAGCAAAU-------------AAUAAAAUAAAA---------------AUUUGCUUAGAGACUAUACGGAUUUAACUAAUU------------AAA--------------GAUUAGUAAGAUAUAGUCCAAUUUAAUCGAAUUCAUUAAUUUAUAUAUAAUUUUUGAAUGAUUA--------------------------------------------------------UUAUUG--uuaacgaugg
                    ...<<<<<<<--<<---~~~~~---[[[[^>>>>>>>>---------------------------------------------------......<<<<<....<<<<<<....<<<....----------------------------<<<<<<<<<<<<<<<-----~~~~----->>>>>....>.>>>>>>>>>--------------------------------------------.>>>...>>->>>><<<<<<-------------............--------------->>>>>>...[.[[[[[...>>>>>..<<<<<<<------------...-------------->>>>>>>......]]]]]]<<..<<<<<..<<<<<..<<<<.......>>>>..>>>>>>>>>>--------------------------------------------------------...>>.--.]]]]]....
Rsp.mL2067          uacagacccu--UA-------------UUCAGGGGUUU-----------------------------------------------------UAAUUAAAUAAUAAACUGAAAAUU------------------------------------------------------AAA----------------------------------------------------------------------AAUUAAAUC-AGUUAAAUU-----------------CGUAU--------------------AAUUUUUAGAGACUAAAUAUUUAACAAGAU--------------UUA---------------AUCUUGAUGAUAUAGUCCAAAAAGCUCUAAAAAAAAGAGCUU------------------------------------------------------------------------------AUUUG--ugaaauuuua
                    ...<<<<<<<--<.-------------[[[^>>>>>>>-----------------------------------------------------...<<<<<<....<<<<<<.<<<<------------------------------------------------------...---------------------------------------------------------------------->>>>...>>->>>><<<<<-----------------.....-------------------->>>>>...[.[[[[[...>>>>>><<<<<<--------------...--------------->>>>>>......]]]]]]<<<<<<<<<<.......>>>>>>>------------------------------------------------------------------------------.>>>.--]]]]......
Rsp.mL2256          uuuggggcga--AUU------------GCUUUCGCCU--------------------------------------------------GUAUUAAUUAAAUAAAAAAUUGAAAAUUUAGUAUUAAAUA----------------------------------------UCUGGUAC-----------------------------------------------------------UGUAAAUACUAAAAAUC-AGUUGGAAUAUAUUUA----------UCUU-------------UAAAUUUUAUUCUUCAGAGACUAAAUGUUUAAAUCAUAGUUCAAUAAAAUUAAAUAAAUUUAUUGGAAAAUUUGAUGUGUUAUAGUCCUAAUAAUCAAGUUUUUAAUUGUCUUCUUUGUAUCAUAAUGACAUUUUUAACU----------------------------------------------AAUUUAUUG--aggccucuua
                    ....<<<<<<--<..------------[[[^>>>>>>--------------------------------------------------.......<<<<<<....<<<<<<...<<<<<<<<<..<<<----------------------------------------........----------------------------------------------------------->>>.>>>>>>>>>..>>->>>><<<<<<.<<<<<----------....------------->>>>>..>>>>>>...[.[[[[[...>>>>>><<<<...<<<<<<<<<..........>>>>>>>>>.....>>>>......]]]]]].<<<<<...<<<<......<<<<................>>>>.....>>>>----------------------------------------------...>>>>>.--]]]]......
Rsp.mL2449          cucaagggau--UA------------UUGUUGUCCCUU---------------------------------------------------AAAAUCAAGACUAAAAAGAAAU-------------------------------------------------------AAAUAAAAG-------------------------------------------------------------------------AUU-UCUUAUGGAU----------------UUAUUU------------------AUCCAUUUAACGACUUUACGUCUUGGAAAAGUUUAA--------(421)---------UUAAACUUUUUAAGAAAAAGUCUAUGUGAAUA-UUUAUAUUCAU----------------------------------------------------------------------------------AAUG--aacaggguaa
                    ...<<<<<<<--..------------[[[[[>>>>>>>---------------------------------------------------.....<<<<<<....<<<<<<<-------------------------------------------------------.........------------------------------------------------------------------------->>>->>>><<<<<<----------------......------------------>>>>>>...[.[[[[[...>>>>>><<<<<<<<<<<--------~~~~~--------->>>>>>>>>>>......]]]]]]<<<<<<<<<-....>>>>>>>----------------------------------------------------------------------------------.>>.--]]]]].....
Apa.mL2584          ugagcugggu--AAAC----------GUUGAGCCCAG-------------------------------------------------GGUUUAAACUUCGCUAUAUGCUGGAAUCUCCUAAAG-----------------------------CCUUAAGUACUCU-----UCA------AGAGUAACAAUCUUAAGG-------------------------------------AUGCGCCAAUGGACAAUC-AGCAGGAAACCAACUCAUAC-------AUA---------GUAUGAUAGUAGAAUCCUCAGAGAUCACACGCGAAGUAAGAUAGA-----------UUA-----------UCUAUUCUUAAAGAUAUGAUCCAUAUUUGUAAUUUA-ACAAAU----------------------------------------------------------------------------------UAUG--ucaguacguc
                    ....<<<<<<--....----------[[[[[>>>>>>-------------------------------------------------........<<<<<<....<<<<<<....<<<.....-----------------------------<<<<<<<<<<<<<-----...------>>>>>....>.>>>>>>>-------------------------------------..........>>>...>>->>>><<<.......<<<<<<-------...--------->>>>>>........>>>...[.[[[[[...>>>>>><<<<<<<<<-----------...----------->>>>.>>>>>......]]]]]]<<<<<<<<......->>>>>>----------------------------------------------------------------------------------.>>.--]]]]].....
Sce.m.COX1,3        agguuuuggu--A----(1100)----AGAUGCCG--------UAAUAUAUU-------------GUAA----------AAUAUAUUAUUAUUACAACACUAUAUGCGGGAAAACCCUAAAGU----------------------------CAUAAUAUAAUAUUAU--(67)--AUAGUAUUAAAAAUUAUUAUGAAUAAUUUCCCCACCCCCAUGCGAAGCAUGGGGGGGGGUAUAAGUAUGGACAAUC-CGCAGGAAACC----------------(84)-------------------GGAUCCUCAGAGACUACACGUGUUGCACCCAUUAUAU--------UAU--------GUAUAAUGGGUUGAAGAUAUAGUCCAAAUAUAAUUGAAAGAUUAUA------------------------------------------------------------------------------AUAAAAUG--aacuauuuau
                    ......<<<<--<----~~~~~~----[[.^>>>>--------<<<<<<<<<-------------....---------->>>>>>>>>......<<<<<<....<<<<<<.....<<......----------------------------<<<<<<<<<<<<<<<<--~~~~-->>>>>>>>....>.>>>>>>>.<<<....<<<<.<<<<<<<<<...>>>>>>>>>>>>>......>>>>>....>>->>>><<<..<<----------------~~~~------------------->>.>>>...[.[[[[[...>>>>>><<<<<<<<<<<<--------...-------->>>>>>>>>>.>>......]]]]]]<..<<<<<<<....>>>>>>>------------------------------------------------------------------------------......>.--].]]......
Mvi.m.COX1,1        uguuugggcu--UACAGAAUGUG----GUUGGGCCC---CCUUCAAUGGCUUCUUCAGGCGCUGUGCUCGCUGUGCUCUGAGGUGAUUGAUAAACUUUGCUAUAUGCUGGAACACCCUAGAG-----------------------------CUUUUCGUCCA------ACUGAA------UGGAAAAAUCGAAAAG--------------------------------------------AUUGGGCAAUC-AGCAGGAAACUUUCU------------(93)--------------AGAAAGGAUCCUCAGAGACUUUACGCAAAGAAACUUUU--------CAAAUCAAAUU---------AAAAGUUUAUGAUAAAGUCCGUCUUUCUUUGAAAAAAGAAAGA---------------------------------------------------------------------GAUUAAAAAAAAAUG--caccauaugu
                    .....<<<<<--<<.........----[.^^>>>>>---...<<<<<.<<<<<....<<<<<.<<....>>.>>>>>..>>>>>.>>>>>....<<<<<<....<<<<<<....<<<.....-----------------------------<<<<<<<<<<<------......------>>>....>.>>>>>>>--------------------------------------------...>>>...>>->>>><<<..<<<<<<------------~~~~-------------->>>>>>..>>>...[.[[[[[...>>>>>><<<<<<<<--------...........--------->>>>>>>>......]]]]]]<<<<<<<<<<....>>>>>>>>>---------------------------------------------------------------------.............>.--]].]......
Ceu.m.ND1,1         accagaggcu--A-----(116)------UUGGCCUCU---------------------------------------------------UUAAAAGUUACAUUAUGCUGAAAAAAUAAACAACG----------------------------UAUUGU-----------UUUU----------------AUAAUA---------------------------------------AAUCGGUUGGAUAAAUC-AGCAGGCACCCGUUUAGUUUCAGA---UAUA------UCUGAAACUAAACGGGUCCUUAGAGACUAGACGUAACUAUGCGGCGGU----------UAAC------------ACAGCCCAAUAAUAUAGUCCAAUUUCAAAUUAACGGAGG-------------------------------------------------------------------------------------CAG--aacuaguagc
                    ...<<<<<<<--<-----~~~~~------[^>>>>>>>---------------------------------------------------.....<<<<<<....<<<<<<.......<<<....----------------------------<<<<<<-----------....---------------->>>>>>---------------------------------------.....>>>.......>>->>>><<.<<<<<<<<<<<<<<<<<---....------>>>>>>>>>>>>>>>>>>>...[.[[[[[...>>>>>>.<<.<<<.<<----------....------------>>.>>>>>......]]]]]]..<<<<.........>>>>-------------------------------------------------------------------------------------...--]]........
Mse.m.ND5,1         aauggaaggu--UGG----(22)---AAUUAGCCUU--------------------------------------------------GAUUAUAAAUACACUAUAUGCUGGAAAGACCU---------------------------------------------------UGA----------------------------------------------------------------------GGGUUAAUC-AGCCGGUAACAAAGCUGGGAG------(51)-------CUCUUCGCUGUUGGUACCUCAGAGACUUUAUGUGAAUCCACUU-------------(1412)-------------AAGUGGAAGAAAAAGUCCUAUCCGCUAUGAGAGUAGCGGCCCCACCAUUAAUGGUGG--------------------------------------------------CGUAACAACUAUUUAAUA--ccaacuccgg
                    .....<<<<<--<<<----~~~~---[.^^>>>>>>--------------------------------------------------........<<.<<<.....<<<<<...<<<<<---------------------------------------------------...---------------------------------------------------------------------->>>>>..>>->>>.<<<<.<<<<<<.<<<<<------~~~~------->>>>>.>>>.>>>.>>>>...[.[[[[[...>>>.>><<<<<<-------------~~~~~~------------->>>>>>......]]]]]].<<<<<<<<<....>>>>>>>..<<<<<<....>>>>>>--------------------------------------------------...............>>.--..]].]....
Pma.m.COX1,1        cugauauggc--A-----(948)-AGGGAAUGCCGU---UAAAAAGU------------------GUAA----------ACUUUUUA-UUAUUACUUCGCUAUAUACAUGGAAUUUCUCG--AAUUUGGAAUUAAUUUUCCAGUUAACAG-AUACAUAGACACCUAGUU(29)AACUAGUCGUAACACUUAUGUAU-----------------------------------------ACAUGGGAAGAAUG-UGUAGGAAACCAAAUGAUAAU------UAAU-------AUUAUCUUAGUAGGAUCCUCAGAGACUACACGCGAAGCUCCAU--------------UUUA-------------AUGGAUGAAGAUAUAGUCCGUUUAAGUAAGAAACUACUUAAGUUUUUUUUACUUUAUAAAAUUAAAAAAAA------------------------------------------------AAUAAUG--auucccuaga
                    .....<<<<<--<-----~~~~~-[[[[[[^>>>>>---<<<<<<<<------------------....---------->>>>>>>>-......<<<<<<....<<<<<<...<<<<<<.--<<<<.<<<<......>>>>>>>>.....-<<<<<<<<<<..<<<<<<~~~~>>>>>>..>>....>.>>>>>>>-----------------------------------------....>>>>>>..>>->>>><<<..<<....<<<<<<------....------->>>>>>......>>.>>>...[.[[[[[...>>>>>><<<<<<--------------....------------->>>>>.>......]]]]]]<<<<<<<<<......>>>>>>>.<<<<<<<<<.<<<...>>>.>>>>>>>>>------------------------------------------------....>>.--]]]]]]]...
Pma.m.COX1,4        aguuugaagu--UGAUUU----------AUGGCUUCA---UCUUAUA------------------GUAA----------UAUAAGUAUUUAUUAUUUCGCUAUAUGCUUGGACAGUUUUA----------------------------UGCUUAUUAGUACC-----UUGAAU-------GGUAAAAAUCUAAUAAGUA------------------------------------------CGACUCAAUG-AGCAAACAAUCUGUCCCUAUAUUUU--UUAA-----GAAAUAAAAUACAGAGCGUUUCAGAGACUACAUGCGAAACAUCUUUUAA---------(855)----------UUAAAAGAUGAAGAUAUAGUCCGAUUCUUGGAGCGAUCCAAGCGCAUUAUUUGCGGGCAAAUAUGAAAAAUAUUUGUU------------------------------------------AACAUUUUG--caucacaugu
                    ....<<<<<<--<<....----------[^^>>>>>>---.<<<<<<------------------....---------->>>>>>.........<<<<<<....<<<<<<...<<<<...----------------------------<<<<<<<<<<<<<<-----......------->>>....>.>>>>>>>>>>------------------------------------------.>>>>...>>->>>><<<..<<<<<.....<<<<<<--....----->>>>>>....>>>>>..>>>...[.[[[[[...>>>>>><<<<<<<<<<---------~~~~~---------->>>>>>>>>>......]]]]]]<<..<<<<<<....>>>>>><<<<.....>>>><<<<<<<<<.....>>>>>>>>>------------------------------------------......>>.--]]].......
Pma.m.COX1,5        auuggaggau--UAUU-----AUGCCACUUAGUUCUCC-------------------------------------------------CUUUAAAGACUACAUUAAGCUGGGAACUUCUGAU-----------------------------AAUUAUACUACUAGAAUUUUAUAUAAUUUUAGUAAAAAUGUAUAAUU--------------------------------------------UUGAACAAUC-AGCAGAUUACCUAGAGAUAAU------(19)-------AUUAUCUCGUGGGUAACUUCAGAGACUAGACGUAGUCCUGC----------------GAAA----------------GCAGAAGAUAUAGUCCGUGUAAUAAUAUAUUCAUUAAUUUA(1042)UAAAUUAAUGAAUAUUUAUU------------------------------------------------------CG--uaaguggugu
                    ...<<<<<<<--<<..-----[[[[[[[[^^>>>>>>>-------------------------------------------------.......<<<<<<.....<<<<<....<<<....-----------------------------<<<<<<<<<<<<<<<<<<......>>>>>>>>>....>.>>>>>>>>--------------------------------------------..>>>...>>->>>.<.<<<<<<<<<<<<<<<------~~~~------->>>>>>>>.>>>>>>>>....[.[[[[[...>>>>>><<<<----------------....---------------->>>>......]]]]]]..<.<<<<<.<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>>>>>>>>>>>>------------------------------------------------------>.--]]]]]]]]]]
Pma.m.COX1,7        uuauaggggu--UAGAUAUUUAAA--GGGAAGUUUUU---------------------------(803)------------------CUCCCAAUCCUUCCGUAAUGCUGGAAAAUUUUUAAG----------------------------GCUUAAGUACUUAU----UUA-----AUAAGUAAAAAUCUUAAGU-----------------------------------------AUAUCUAAACAAUC-AGCAGGAAACCAAAGUAAUAAAUAUAUAUAUAUAUAUUUAUAUAUAAGUAGGAUCCUUAGAGACUAGACGAAGGAAAUUAUUUA-----------UUAUU----------UAAAUAAUUAAGAUAUAGUCCAUAAUG-------------------------------------------------------------------------------------------------------uaauuuaaca
                    ....<<<<<<--<...........--[[..^>>>>>>---------------------------~~~~~------------------.......<<<<<<.....<<<<<<....<<<.....----------------------------<<<<<<<<<<<<<<----...----->>>>>>....>.>>>>>>>-----------------------------------------......>>>...>>->>>><<<..<<...<<<<<<<<<<<<<....>>>>>>>>>>.>>>.....>>.>>>...[.[[[[[...>>>>>><<<<<<<<<-----------.....---------->>>>>>>>>......]]]]]]<...>.-------------------------------------------------------------------------------------------------------]..]].....
Kla.m.COX1,3        ucucaugauu--AAU----(24)-----GUUGAUCA----------------------------(998)------------------UAUAUUAAGAAGCAAACUCGAGAGAAAUCCUAUAUAUAU----------------------------------------AAAUUAGA------------------------------------------------------------AUUUAUAUAGGGCAAUCGUCGAACUAAAUUAUAUAUAA-------GAAA---------UUAUAUAUAUAAAAGCGUAGAGAUCAGAUGCUUCUGGUAUUU-------------(60)------------GAAUACAUAAGGAAUGAUCCAAUGGAACUAGUAAUAGUUUU------------------------------------------------------------------------(185)AAAAAUAAG--agcaacaauu
                    .....<<<<<--<<<----~~~~-----^^^>>>>>----------------------------~~~~~------------------.......<<<<<<<...<<<<<<....<<<<<<<<<.<<----------------------------------------........------------------------------------------------------------>>.>>>>>>>>>...>>.>>>>.<<....<<<<<<<<<-------....--------->>>>>>>>>....>>....[.[[[[[..>>>>>>><<<<<<<-------------~~~~------------>>>>>>.>......]]]]]].<<<<<<<<<....>>>>>>>------------------------------------------------------------------------~~~~~....>>...--]]].......