P1 P10 P1' P2 P2' P2.1 P2.1' P3 P4 P5 P5a P5a' P5' P4' P6 P6a P6a' P6' P7 P7.1 P7.1a P7.1a' P7.1' P3' P8 P8' P7' P9.0 P9 P9' P9.1 P9.1' P9.2 P9.2' P9.0' P10'
Ceu.cL958 acgucgggau--UUUAAA----------UAGUCCC----CCUUUAUA------------GUGA------------UAUAAAGG--UUCUCUUU--------(74)-------AAGUGAG----UUCCGAAAAAUUGGGUGAAUUGCCAAGGACGCUAAGUUAAAAGCUACUCGACUCGC-------------UUA--------GCGAGUCGAGUAUUAAGCCUUUAAUACGCCAACUUGCAGCCAAGUCUAACGAAUUUU----------CGAA-----------AAGGUAGUUAGAAAGGUUCAACGACUAGGGCUUGAGUA-CGAA--AUAUCAAUAAC-AGCCCCACGAGCGCCCAACAACUUA----------(49)------------UAAGUUGAAGACAUAGUCUGAACUGUAAA------GAAA---UUUACAGA--GCUAGUUAUUAAAAAC-ACUAGCA--CUAUUUGCAAAGGACAAAUAG--------------------------AUUAACAU---AAUUG--aagcugaugu
.....<<<<<--<.....----------[^>>>>>----<<<<<<<<------------....------------>>>>>>>>--..<<<<<<--------~~~~------->>>.>>>----..........<<<<<<<...<<<.<<<...<<...<<<<<<.<<<<<<<<<<<<<<-------------...-------->>>>>>>>>>>....>>>.>>>>>>..>>...>>>>>><<<...<<<<<<..<<<<<----------....----------->>>>>.>>>>>>..>>>...[.[[[[[<<<<<<<<...-....--...>>>.....->>>>>......>>>>>>><<<<<<<----------~~~~------------>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.--<<<<<<..........->>>>>>.--<<<<<<<.......>>>>>>>--------------------------.....]..---..>>.--....]]....
Cca.cL958 agugggggau--AAGAG------GAAGCUUGUCCG----UUCUAAAU------------AAGA------------AUUUAGAA------------------------------------------UUAAACUACUAGGUGAAUUG-CGAGAAAGCUAAGGUUCCU--------------GAGCUAUGCUCUUCCCUACGGGGA----------------AAGGUUACUAUGCUAACUUGCAGCGUAUCUAAGCUAC--------------(55)--------------GUAGCUAAGCACGUUCAACGACUAGGAAAUGAGGAUUGAA--AAUCCAAUAAAUAUUCCCAAGAGUGCCUGGCAACUUU----------(85)------------AAAGUUGAUGACAUAGUCUGAUCUUUAGG------GAAA---CCUAAAGAA-GCAGGAGAUAAAGAG-CUCCUGCG--CUUUACUUAAUUUUUUAAGUAAAG----------------------(1266)CAA----CAAG--aagcuucauu
......<<<<--<<<..------[[[[^^^>>>>.----<<<<<<<<------------....------------>>>>>>>>------------------------------------------........<<<<<<<...<<-<<<<..<<<..<<...<<.--------------<<<<...>>>>.<<<<....>>>>----------------..>>...>>..>>>..>>>>>><<<<..<<.<<<<<<--------------~~~~-------------->>>>>>.>>.>>>>...[.[[[[[<<.<<<<...<<<<..--....>>>>...>>>>.>>.....>>>>>>><<<<<<<----------~~~~------------>>>>>>>......]]]]]][.<<<<<<<<------....--->>>>>>>..-<<<<<<<........->>>>>>>.--<<<<<<<<<<....>>>>>>>>>>----------------------~~~~~~]..----.>..--]]]]]]]...
Ceu.cL1065 gaaguuugcu--C-----------UUUUUGGGCUA----GCUAAUAU------------GUGA------------GUAUUAGU------------------------------------------GAUAAAAACUGGGUGAAUUGUCAAGAAGACUAACGUCUAUGUUUAUUA---------------UAUUUUAAAUU--------------UAAUAACUGUAGACCAUGUUAACUUGCAGCGAAGCUUAUC-----------GAAUGGUAAAUAACAGUA---------GAUAAGAACGUUCAACGACUAGAAAGUGAAGAUUACC--AA-CUAAUAA-ACUUUCCACGAGCGCCCAGCAACUUU----------(106)-----------CAAGUUGAAGACAUAGUCUGAACUGUAAA------GAAA---UUUACAGAAAGAAAAGCUUAAA---AGCUUUUUAGUGAUUUUAUUCAGCAAGAAAUAGAAUC----------------(126)UAUAACAA----AUUG--uagaagcagc
.......<<<--<-----------[[[[[^>>>..----<<<<<<<<------------....------------>>>>>>>>------------------------------------------........<<<<<<<...<<.<<<<..<<<....<<<<<<<.<<<<<<---------------...........-------------->>>>>>.>>>>>>>...>>>..>>>>>><<<...<<<<<<-----------..................--------->>>>>>..>>>...[.[[[[[<<<<<<....<<<<..--..-..>>>>.-.>>>>>>.....>>>>>>><<<<<<.----------~~~~~-----------.>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>...<<<<<<<<....--->>>>>>>>...<<<<<<<<<<.....>.>>>>>>>>>----------------~~~~~.....]..----.>>.--]]]]]]....
Csp.cL1065 gagguuugcu--UAGAA----------UUAGGCU-----GGGGUACUU-----------GUAA----------AAGUACUACC----------------------------------------------AUAAUUGGGUGAAUUGCCAAGAAGGCUUAAGUAU-----------------------------(77)-------------------------AUACUUUUGACGAACUUGCAGCGAAGCUUGCUGAAAGAUUAAU----AGGUUUUAUCU----AUUACGUAGGCAAGAACGUUCAACGACUAGAGGGUGAGGACAAUC--AA-CCAAUAAU-CUCUCCACGAGCGCCCAACAACUCUU---------(26)-----------AAGAGUUGAAGACAUAGUCUGAACUUUAGG------GAAA---CCUAAAGAG-GCAAGGGAUUAAAAG-CCUUUGC---GUUGCC--(144)---GGUAAC---------------------(88)AUUAACAC---AAUUG--uagaagcagc
.......<<<--<<...----------[^^>>>.-----<<<<<<<<<-----------....---------->>>>>>>.>>----------------------------------------------....<<<<<<<...<<.<<<<.......<<<<<<-----------------------------~~~~------------------------->>>>>>........>>>>>><<<...<<<<<<.......<<<<----...........---->>>>....>>>>>>..>>>...[.[[[[[<<<<<...<<......--..->>......->>>>>......>>>>>>><<<<<<<<---------~~~~----------->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..-<<<<<<<........->>>>>>>---<<<<<<--~~~~~--->>>>>>---------------------~~~~.....]..---..>>.--]]].......
Dpa.cL1065 gagguuugcu--CAA------------UUGGGC------UUGCUUGUAGCAAAACCUAGGCUAUAGGGAAAAAACACAAGUGA---------------------------------------------AAAAAUCGGGUGAAAUG-CAAGAUAGCUAACGUUGUUUUAUUAAGAU----------------AAUAAA--------------AUUUUUAGAACAAUGGUGCGCUAAUUUGCAGCGAAGUUUAUUGAAA--------------GAUCA-------UUUAAGUAAAUAAAAACGUUCAACGACUAGGCGGUGAGGA-GAUC--ACACCAAUAA-ACCGCUCACGAGAGCCCGACAACAAAAC-------AAUCUAA---------GUUUGUUGAAAACAUAGUCUGAACUGUACA------GAAA---UGUGCAGAAACAAGAG-AUAAAAA--CUCUUGA-----UGUGUCCUUUUUU-AAGGCGCA------------------(146)AAUAACAA----AUUG--uagaagcagc
.......<<<--<..------------[[^>>>------<<<<<<<<.......<<<<.....>>>>........>>>>>>>>---------------------------------------------.....<<<<<<<...<<-<<<<.<<<<...<<<<<<<<<<..<<<<<----------------......-------------->>>>>>>>>>>>>>>....>>>>.>>>>>><<<...<<<<<<.<<<--------------.....------->>>.>>>>>>......>>>...[.[[[[[<<<<<<..<<.-....--...>>.....->>>>>>......>>>>>>><<<<<<<.<-------.......--------->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>...<<<<<<-.......-->>>>>>.-----<<<<.<<<<....->>>>>>>>------------------~~~~~.....]..----.>>.--]]].......
Hla.cL1065 gaaguucgcu--CA------------UCAGGGCG-----CAAUAACAU-----------GUGA-----------AUGCUAUUG----------------------------------------------AAAAUUGGGAGAAUUGUCAAGGACGCUAAGGUAA----------------------------AAAAAA--------------------------UUACUAUGCCAAUUUGCAGCGGAGUAUGGCAAU---------CGCCUUAAGAAAAAA--------AUUGCUAUAAACGUUCAACGACUAGGAAGUGAGUAAAAUG--CGUACAAUAAU-CUUCCCACGAGUACCCAACAUCUUG----------(104)-----------CAAGAUGAAGACAUAGUCUGAACUAUAUG------GAAA---CAUAUAGAAACAAAAG-AUAAAGAG-CUUUUGUA---UGUCUUAUGAUAAUUAAUUUAAAAAAAAUUAUUAUAUCGACA(196)GAAACAA-----UUG--uagaagcagc
......<<<<--<.------------[[.^>>>>-----<<<<<.<<<-----------....----------->>>.>>>>>----------------------------------------------....<<<<<.<...<<.<<<<...<<...<<<<<----------------------------......-------------------------->>>>>..>>...>>>>>><<<...<<<<<<<<<---------...............-------->>>>>>>>>..>>>...[.[[[[[<<<<<...<<<.....--..>>>......->>>>>......>.>>>>><<<<<<<----------~~~~~----------->>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..<<<<<<<-........->>>>>>>.---<<<<.<<<<<<<<<<...........>>>>>>>>>>..>>>>~~~~~....]..----->>.--].]]......
She.cL1065 gaaguucgcu--UAAAUAA----------GGG-------CUGGUUUAUA--------AAAAAAA---------UAUAAACUAG------------------------------------------------AAUUGGGUUAAUUGUCAAGGACGUUUGAAGUAUU---------------------------(38)------------------------UGAUACUCAUACCGACUUGCAGCGUAG-UUACUAAGUGA----------UUAAU-----------UCAUUUGUUAAGAACGUUCAACGACUAGAAAAAUGAGUAUUUU--AACAAUACUCAUUUCUCCACGAGCACCCAACAAUGGUU---------AAUU-----------AACCAUUGAUGACAUAGUCUGAACUGUGAA---AAAUACAUAAUUCACAGAAACAAAGG-AUAAAAAA-CCUUUAUA--GAAAAUUUUUAAAAAUUUUC-----------------------(1245)CAACAC---AAUUG--uagaagcagc
........<<--<......----------^>>-------<<<<<<<<<<--------.......--------->>>>>>>>>>------------------------------------------------..<<<<<<<...<<.<<<<...<<.<<<.<<<<<---------------------------~~~~------------------------>>>>>>>>.>>....>>>>>><<<...-<<<.<<<<<<<----------.....----------->>>>>>>.>>>...>>>...[.[[[[[<<.<<<<<<<<<<<..--...>>>>>>>>>>>.>>......>>>>>>><<<<<<<<---------....----------->>>>>>>>......]]]]]][<<<<<<<<<---..........>>>>>>>....<<<<<-........->>>>>...--<<<<<<<<....>>>>>>>>-----------------------~~~~~~...]..---..>>.--].........
Naq.cL1255 aagugagaau--AAACAAGCG-----AAUUGUUCUCACU--------------------------------------------------------------------------------------AUAAUAAAUUGGGUGAAAUG-CAAGAAAAACUUU---------------------------------GAAU-------------------------------GAAGUUAACUUGCAGCGAAAAUUACU---------------UUUA-------------------AGUAAAUACGUUCAACGACUAGAAGUGAA----------------AUAAU-CUUC-CACGAGUCCCCAACAAUAC-----------AAUA-------------GUAUUGAAGACAUAGUCUGAACUUUAAGGGU---(57)----ACUCUU-UUAUUCACAAUUUC--AUUGUGAAUA--UUAAAG-(192)---CUUUAA------------------------UCAAUAACAA----ACUG--guuggcuuga
.<<<<<<<<<--<<.......-----[[^>>>>>>>>>>--------------------------------------------------------------------------------------........<<<<<<<...<<-<<<<...<<<<<<---------------------------------....------------------------------->>>>>>..>>>>>><<<....<<<<<---------------....------------------->>>>>...>>>...[.[[[[[...<<<<<----------------.....-.>>.->>>...>>>>>>><<<<<<-----------....------------->>>>>>......]]]]]][<.....<<<<<<---~~~~---->>>>>>-.<<<<<<<<<<...-->>>>>>>>>>--<<<<<<-~~~~~--->>>>>>------------------------.......]..----..>.--]]].......
Cca.cL1255 aagugagaau--AA---------GCCAAUUGUUCUCACU--------------------------------------------------------------------------------------AUAAUAAAUCGGGUGAAUUG-CAAGGAAAGCUUCUUAUCA--------------------------UAUUGA-------------------------GAAAAGAAGUCAACUUGCAGCGAAACUUAC------------------AAAUAA----------------GUAAGGACGUUCAACGACUAGGGACCUA----------------AUAAA-UCCU-CACGAGUGCCCGACAGCG---------AUACAAAAAA-----------CGUUGAUGACAUAGUCUGACCUUUAAG------GAAA---CUUAAAGAAAGGGGGGGAUUAA--AUGCUCCCU-AUGCACCAGGCUUUUUAAGCUUAGGUGUGUGUUA------------(177)UAACAA----AGUG--gucggcuuga
.<<<<<<<<<--<<---------[[[.[^>>>>>>>>>>--------------------------------------------------------------------------------------........<<<<<<<...<<-<<<<.....<<<<<<<.<<--------------------------......------------------------->>.>>>>>>>...>>>>>><<<...<<<<<------------------......---------------->>>>>..>>>...[.[[[[[<<<.....----------------.....->>>.-......>>>>>>><<<<<---------..........----------->>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>....<<<<<.<<...-->>.>>>>>.-....<<<<<<<<<<<<<...>>>>>>.>>>>>>>------------~~~~~...]..----.>>.--]].]]]....
Cko.cL1255 aagugagaau--AAAG---------CAAUUGUUCUCACU--------------------------------------------------------------------------------------AUAAUAAAUCGGGUGAAUUGACAAGGAAACUAAAGUUUGAA----------------GACAUAACAAUUUAAAAUAAA-----------------UUCAAACCAUGUCAACUUGCAGCGAACGUUACUGAAUGGUU----------AAUU-------AAUCUUGUAGGUAAGAACGUUCAACGACUAGAGAGUGAGGAAAACCU---ACCAAUAAUCUCUC-CACGAGCGCCCGAUAUCCCAAGU-------UUUA---------ACUUGGGAUAAUGACAUAGUCUGAACUUUAAG------GAAA---CUUAAAGAACGGGAGAGU-UAA--AUUCUCUU---UAUUUCUAACAAGGCUUACGCCUCUCCCGAAUGGGGGUGGAA-----(1112)CAA----CAUG--gucggcuuga
.<<<<<<<<<--<<..---------[.[^>>>>>>>>>>--------------------------------------------------------------------------------------........<<<<<<<...<<.<<<<.........<<<<<<<----------------.....................----------------->>>>>>>........>>>>>><<<....<<<<<....<<<<----------....------->>>>.....>>>>>...>>>...[.[[[[[<<<<<..<<<....>>>---.........>>>>>-......>>>>>>><<<<<<<<<<-------....--------->>>>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>....<<<<<<<-...-->>>>>>>.---<<<<<<<<..........................>>>>>>>>-----~~~~~~]..----..>.--]].]......
Cfr.cL1255 aagugagaau--AAA-----CAAGCCAAUUGUUCUCACU--------------------------------------------------------------------------------------AUAAUAAAGCGGGUGAAUUGACAAGAAAGCUA------------------------------------AAG--------------------UAGUCAAAAACAAUGCCAACUUGCAGCCAAGCUCAGA-------------AAAGCAAAAAAUGUA----------UCUGAGAAGGUUCAACGACUAACAGGUGAGGAUAAGC---AACCAAUAA-ACCUGACACGAGCGCCUGCCAGCCUAGUUU-----AAUCAUC------AAACUAGGUUGAUGACAUAGUCUGAACUUUAAG------GAAA---CUUAAAGAAAGGAAGAGU-UAAAU--GCUCUUA--------------------------------------------(1192)AAUAACAU---UUUUG--gucggcuuga
.<<<<<<<<<--<<.-----[[[[[[.[^>>>>>>>>>>--------------------------------------------------------------------------------------........<<<<<<<...<<.<<<<...<<<<------------------------------------...-------------------->>>>...............>>>>>><<<...<<<<<<-------------...............---------->>>>>>..>>>...[.[[[[[.<<<<<..<<......---..>>.....->>>>>.......>>>>>>><<<<<<<<<<<-----.......------>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.....<<<<<<-.....-->>>>>>.--------------------------------------------~~~~~~.....]..---..>>.--]].]]]]]].
Pan.mL1699 acuuagggau--GU--------------UUGUCCU----CCAGUAAUUUAAGU-----AUUAAC---ACUUAAAAUUGACUGG-------------------------------------------UAAUAUAUUGGGAAAAUUU-CAAAAACUACUUUUAACAUAGGC-----------------------GCAA-----------------------GCUCUAGAUAAGUAGAUUUGAAGCGAAGUUUAUUAGU-------------AUU(108)------------ACAAUAAAUUCGUUCAACGACUAAGGCGUGAGUAAUAC-----AGCAAUAAU-CGCCU-UUUAAAACCCAACUUAUCU---------(1130)----------AGAUAAUGAAGACAUAGUCUGAACCAUGUU------GUAA---AAUAUGGAA--AGUUAAAGUUAAGGCGCAAGCUCUAAUUAGAGCUUUCGCCUUAAUAACU-----------------------GAUAACAA----GUUG--aaggagggcu
......<<<<--..--------------[[>>>>.----<<<<<<<<<<<<<<-----......--->>>>.>>>>>.>>>>>-------------------------------------------.......<<<<<<<...<<-<<<<..<<<<<<......<<<<<-----------------------....----------------------->>.>>>...>>>>>>.>>>>>><<<.<<<<<<<<.<<-------------...~~~~~------------>>>>>>>>>>>>>...[.[[[[[<<<<<..........-----.........->>>>>-.....>>>>>>>.<<<<<<---------~~~~~~---------->>>>>>........]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<.........................................>>>>-----------------------.....]..----.>>.--]]........
Ceu.cL1766 uguccaggcu--UAG----------UUGUAGGCCU----CCUAUUAG------------GCAA------------CUAAUGGG--------------------------------------------CUAACAUUGGGUGAAUUG-CAUGAAAGCUAAGGCG-------------------------------UAA----------------------------CGCUAUGCUAACCUGCAGCGAAUUACAUCGACUGAUAU----------UAAU------AUAAAAAUAGAUGUACACGUUCAACGACUAGCGAGUGAUGUAAAUCA--GUCAAAUAAU-CUCGCCACGAGCGCCCGACAUCUUG----------(35)------------CAAGAUGAUGACAUAGUCUGAGCAACGUG------GAAA---CACGUUGGA--GCCAAAG-AUAAAAAACUUUGGCACAUUUCUGAAACAUGAAAUGUUCACGUUAAAAAAAAUAAAAACGUGAA--AAACAU---AACUG--caagcaacug
......<<<<--<<.----------[[[>>>>>>.----<<<<<<<<------------....------------>>>>>>>>--------------------------------------------......<<<<<<<...<<-<<<<..<<<...<<<<-------------------------------...---------------------------->>>>..>>>..>>>>>><<<...<<<<<<......<<<----------....------>>>......>>>>>>..>>>...[.[[[[[<<<<<<<<<........-->>>>......->>>>>......>>>>>>><<<<<<<----------~~~~------------>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<-........>>>>>>>.<<<<<<........>>>>>><<<<<<<<............>>>>>>>>--...]..---..>>.--]]].......
Cec.cL1766 ugaccaggcu--GU----------UUGUACGGCCC----CCUAUUAG------------GUGA------------CUAAUAGG--------------------------------------------UAAAAAUUGGGUGAACUGUCAAGAAGGCUUAGGUUAUUUAAUAAAAGUUA----------------UUA-------------UGACUAUAUUAUUAUAAUGAUGCUAACUUGCAGCCAAGUAAUAACACUAAUUUGGUUUU--CCUAUUUGU-AAAGCUACUUGUUAUUAAAGGUUCAACGACUACCAGGUGAUGCUAAUUA--GGUAAAUAAUCCUGGC-ACGAGUGCCCAACAUCUUU----------UCAA------------AAAGAUGAAGACAUAGUCUGAGCAAUACA------GAAA---UGUAUUGAA--GCUGGUG-AUUAAAAGCAUCAGCAGCUUUGAAAAACUUAUUGUAAUAUUUUGUUUAAGUUUUUGAAAG---(683)GCAAGC-AACUG--caagcaacug
......<<<<--<<----------[[[.>>>>>>.----<<<<<<<<------------....------------>>>>>>>>--------------------------------------------......<<<<<<<...<<.<<<<..<<<....<<<<<.<<<<<..<<<<<----------------...------------->>>>>.>>>>>..>>>>>...>>>..>>>>>><<<...<<<<<<<<......<<<<<<<--.........->>>>>>>..>>>>>>>>..>>>...[.[[[[[<<<<<...<<<<.....-->>>>......>>>>>.-.....>>>>>>><<<<<<<----------....------------>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<-........>>>>>>>..<<<<.<<<<<<<<<...............>>>>>>>>>.>>>>---~~~~~.]....-..>>.--]]].......
Smi.mL2449 cgcuagggau--AAAUUACCCAC-----UUGUCCC----AUUAUAUU------------GAAA------------AAUAUAA--UUAUUUAAUUAAU----AUA-----AUUAAUUAAA---------GUAAAUUGGGUGAAUUG-CUUAAAUAUCCAUAU-------------------------------AUAAAA---------------------------AUAUGGACAAUAAGCAGCGAAGCUUAUAAUAACUUUAUAUAUAU---AUAA----AUAUAUAUAAUUAUAAGAACGUUCAACGACUAGAUGAUGAGUAGAGUU----AACAAUAAUUCAU-CCAUGAGUACCCAAUAUCUUAUAAA------(23)------UUUAUUAAUGAUAAUGAUAUAGUCUUAACAAUUUG------GUAA---CAGAUUG----AUAAAUAUAAAAAAAAUAUUUAUAAAAUAACUCCUAUCGGGGUUCCAAUUGGCUCCCGUAGCCGGACCCCGGAACUAAUA---AAUUG--aacaggguaa
.....<<<<<--<<.........-----^^>>>>>----.<<<<<<<------------....------------>>>>>>>--...<<<<<<<<<<----...----->>>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<<<-------------------------------......--------------------------->>>>>>>...>>>>>><<<...<<<<<<<.....<<<<<<<<<<---....---->>>>>>>>>>>>>>>>>..>>>...[.[[[[[.<<<<<<<<<......----.......>>>>>>-.>>>...>>>>>>><<<<<<<<<<<------~~~~------>>>>>.>>.>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>----<<<<<<<<.......>>>>>>>>.............<<<<<<<<<.....<<<<.....>>>>>>>>>>>>>.....]..---..>>.--]]........
Scar.mL2449 cgcuagggau--AAAUUACCCA-----CUUGUCCC----AUUAUAUU------------GAA-------------AAAUAUA----AUUAUUUAAUUAA--UUUA-UUAAUUAAAGUAA--------AGUAAAUUGGGUGAAUUG-CUUAAAUAUCCAUUAUAA------------------------AUAAAUAAAUAAA----------------------UUAUAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUU-UAUAUAU---AUAU------AUAUAUAGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUAAAGUU----AACAAUAAUUCAUC-CAUGAGUGCCCAAUAUCUUAUAAA------(73)--------AUUAUAAGAUAAUGAUAUAGUCUAAACAAUUUG------GUAA---CAGAUUG----UUAAAUAUG-UAAUAUAUUUAA------------------------------------------------AUAAUAAUAAU--AAUUG--aacaggguaa
.....<<<<<--<.........-----[[^>>>>>----<<<<<<<.------------...------------->>>>>>>----.<<<<<<<<<<<<--....->>>>>>.>>>>>>--------......<<<<<<<...<<-<<<<....<<<<<.<<<<------------------------.............---------------------->>>>>>>>>...>>>>>><<<...<<<<<<<<......-<<<<<<<---....------>>>>>>>>>>>>>>>..>>>...[.[[[[[.<<<<<<<<.......----........>>>>>>-.>>...>>>>>>><<<<<<<<<<.------~~~~--------.>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>----<<<<<<<<<-...>>>>>>>>>------------------------------------------------.......]...--..>>.--.].]].....
Scas.mL2449 cgcuagggau--UUACA-------CCUUUUGUCCC----AUUAUAUU------------GUAA------------AAUAUAA--UUAUCAUAU--------AAU---------AUAUGA---------AUAAAUUGGGUGAAUUG-CAAGAAAAUCCUAUA-------------------------------AUAAA----------------------------UAUAGGAUAAUUUGCAGCGAAGUUUAUAACUAUCCAACAUC-----UUU--------GAUGUUUGUUAUAAAAACGUUCAACGACUAGACAAUGAGUAAGAUA----AACAAUAAUUUGUC-CACGAGUGCCCAAUAUCACAUAAGGG--ACAAAAAU-----UCCUAUGUGAUAAUGACAUAGUCUAAACAAUAUA------GUAA---UAUAUUGAA--GUAAUAAU-UAAAUAUUAUUAUA-UAUUAUUACAUCAAGCAUAUAUUUUUAUAUAUAUGAUGAAAAUAAUA----AAUAA----AUUG--aacaggguaa
.....<<<<<--.....-------[[[.[[>>>>>----.<<<<<<<------------....------------>>>>>>>--...<<<<<<--------...--------->>>>>>---------.....<<<<<<<...<<-<<<<...<<<<<<<<-------------------------------.....---------------------------->>>>>>>>..>>>>>><<<...<<<<<<<<.....<<<<<<-----...-------->>>>>>.>>>>>>>>..>>>...[.[[[[[<<<<<...........----.........>>>>>-......>>>>>>><<<<<<<<<.<<<--........----->>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<-.....>>>>>>>>.-<<<<<<<.<<<<<...<<<<<<....>>>>>>.>>>>>..>>>>>>>----..]..----.>>.--]].]]]....
Spa.mL2449 cgcuagggau--AAAUUA----ACCCAUUUGUCCC----AUUAUAUU------------GAA-------------AAUAUAA--UUAUUCAA---------UUAA---------UUGAA----GUAAAUUAAAUUGGGUGAAUUG-CUUAAAUAUCCAUAU-----------------------------AAAUAAAUA--------------------------AUAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUAUAUAUA----------------------GUUAUAAGAACGUUCAACGACUAGAUGAUGAGUAAAGUU----AACAAUAAUUCAUC-CAUGAGUGCCCAAUAUCUAAUAAAUA----(20)------UAUUUAUUUGAUAAUGAUAUAGUCUAAACAAUUUG------GUAA---CAGAUUG----AUAAAUAUGUAAUAAUAUUUAU--------------------------------------------AAAAUAAUUAAUAAA--UUUUG--aacaggguaa
.....<<<<<--<<<<..----[[[[>>^^>>>>>----.<<<<<<<------------...------------->>>>>>>--...<<<<<---------....--------->>>>>----..........<<<<<<<...<<-<<<<....<<<<<<<-----------------------------.........-------------------------->>>>>>>...>>>>>><<<...<<<<<<<<............---------------------->>>>>>>>..>>>...[.[[[[[.<<<<<<<<<......----.......>>>>>>.->>>...>>>>>>><<<<.<<<<<<<<----~~~~------>>>>>>>>.>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>----<<<<<<<<......>>>>>>>>--------------------------------------------...........]...--..>>.--]]..]]]]..
Sce.mL2449-1 cgcuagggau--AAU-----UUACCCCCUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAAUUAA-----UUAU-----UUAAUUGAA---------GUAAAUUGGGUGAAUUG-CUUAGAUAUCCAUAUA-----------------------------GAUAAAAA--------------------------UAAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUUCAUAUAUGUA----------UAUAUACGGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUGGAGUU----AACAAUAAUUCAUC-CACGAGCGCCCAAUGUCGAAUAAA------(825)-------UUUAUUUGAUAAUGAUAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUUAUUUAAAUGUAAUUAC--------------------------------------------------GAUAACAAAAAAUUUG--aacaggguaa
.....<<<<<--<<.-----[[[[[[..^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<<<-----....----->>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<.<<-----------------------------........-------------------------->>>>>>>...>>>>>><<<...<<<<<<<<.......<<<<<....---------->>>>>...>>>>>>>>..>>>...[.[[[[[...<<<<<<<......----.......>>>>>>>-......>>>>>>><<<<<<<<<<<------~~~~~------->>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....].......>>.--]]..]]]]]]
Sce.mL2449-2 cgcuagggau--AAU-----UUACCCCCUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAAUUAA-----UUAU-----UUAAUUGAA---------GUAAAUUGGGUGAAUUG-CUUAGAUAUCCAUAUA-----------------------------GAUAAAAA--------------------------UAAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUUCAUAUAUGUA----------UAUAUACGGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUGGAGUU----AACAAUAAUUCAUC-CACGAGCGCCCAAUGUCGAAUAAA------(825)-------UUUAUUUGAUAAUGAUAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUUAUUUAAAUGUAAUUAC--------------------------------------------------GAUAACAAAAAAUUUG--aacaggguaa
.....<<<<<--<<.-----[[[[[[..^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<<<-----....----->>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<.<<-----------------------------........-------------------------->>>>>>>...>>>>>><<<...<<<<<<<<.......<<<<<....---------->>>>>...>>>>>>>>..>>>...[.[[[[[...<<<<<<<......----.......>>>>>>>-......>>>>>>><<<<<<<<<<<------~~~~~------->>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....].......>>.--]]..]]]]]]
Sce.mL2449-3 cgcuagggau--AAU-----UUACCCCCUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAAUUAA-----UUAU-----UUAAUUGAA---------GUAAAUUGGGUGAAUUG-CUUAGAUAUCCAUAUA-----------------------------GAUAAAAA--------------------------UAAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUUCAUAUAUGUA----------UAUAUACGGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUGGAGUU----AACAAUAAUUCAUC-CACGAGCGCCCAAUGUCGAAUAAA------(827)-------UUUAUUUGAUAAUGAUAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUUAUUUAAAUGUAAUUAC--------------------------------------------------GAUAACAAAAAAUUUG--aacaggguaa
.....<<<<<--<<.-----[[[[[[..^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<<<-----....----->>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<.<<-----------------------------........-------------------------->>>>>>>...>>>>>><<<...<<<<<<<<.......<<<<<....---------->>>>>...>>>>>>>>..>>>...[.[[[[[...<<<<<<<......----.......>>>>>>>-......>>>>>>><<<<<<<<<<<------~~~~~------->>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....].......>>.--]]..]]]]]]
Sdo.mL2449 -gcuagggau--AAAAA---UUACCCAUUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAA---------UUAA---------UUGAA----GUAAAUUAAAUUGGGUGAAUUG-CUUAAAUAUCCAUAU-----------------------------AAAUAAAUA--------------------------AUAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUAUAUAUA----------------------GUUAUAAGAACGUUCAACGACUAGAUGAUGAGUAAAGUU----AACAAUAAUUCAUC-CAUGAGUGCCCAAUAUCUAAUAAAUA----(20)------UAUUUAUUUGAUAAUGAUAUAGUCUAAACAAUUUG------GUAA---CAGAUUG----AUAAAUAUGUAAUAAUAUUUAU--------------------------------------------AAAAUAAUUAAUAAA--UUUUG--aacaggguaa
-....<<<<<--<<<..---[[[[[[.>^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<---------....--------->>>>>----..........<<<<<<<...<<-<<<<....<<<<<<<-----------------------------.........-------------------------->>>>>>>...>>>>>><<<...<<<<<<<<............---------------------->>>>>>>>..>>>...[.[[[[[.<<<<<<<<<......----.......>>>>>>.->>>...>>>>>>><<<<.<<<<<<<<----~~~~------>>>>>>>>.>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>----<<<<<<<<......>>>>>>>>--------------------------------------------...........]...--..>>.--]]..]]]]]]
Sse.mL2449 cgcuagggau--AAGU------ACCCAUUUGUCCCA----UUAUAUA----------AAGAACAA----------UAUAUAAUAAACAUAUUAUUAAUA--AAUAA-UAUUAAUAAUAU--------UAAAAAUUGGGUGAAUUG-CAAGAAAAUCCUAU-------------------------------AAUUAAC----------------------------AUAGGAAAAUUUGCAGCGAAGCUUAUAAAUAUCUAUAUAUAAAAUAUAA--AUUUUAUAUAAUAUUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGAU----AAACAAUAAUUUAUC-CUAGAGCGCCCAAUAUCUAU----------(26)------------AUAGAUAAUGACAUAGUCUAAAUAAUUUG------GUAA---CAAAUUA-----------------------------------------------------------------------------ACAAUAAA--AUUUG--aacaggguaa
.....<<<<<--<<<<------[[[[>>^^>>>>>.----<<<<<<<----------........---------->>>>>>>.....<<<<<<<<<<<<--.....->>>>>>>>>>>>--------......<<<<<<<...<<-<<<<....<<<<<<-------------------------------.......---------------------------->>>>>>...>>>>>><<<...<<<<<<...<<.<<<<<<<<<<<<....-->>>>>>>>>>>>>>>>>>>>..>>>...[.[[[[[....<<<<<<<<...----......>>>>>>>>.-......>>>>>>><<<<<<<----------~~~~------------>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>-----------------------------------------------------------------------------....]...--..>>.--]]..]]]]..
Sex.mL2449 cgcuagggau--AAAUAUA----UACCCUUGUCCCA----UUAUAUU------------GAAAAA----------AAUAUAA--UUAUUUUGGU-------AUUU-------ACCAAAA---------GUAAAUUGGGUGAAUUG-CAAGAAGAUCCUUA--------------------------------AAAUA-----------------------------UAAGGAAGAUUUGCAGCGAAGUUUAUAACUAUCUAACAUU-------AAU------AAUGUUUGUUAUAAAAACGUUCAACGACUAGACAAUGAGUAAGAU----AAACAAUAAUUUGUC-CACGAGUGCCCAAUAUCUAUA---------(821)----------UAUAGAUAAUGAAAUAGUCUAAAUAAUUUG------GUAA---CAAAUUAA---AUAAAUAU-ACAA-AUAUUUAU-----------------------------------------------------------AAAAUUG--aacaggguaa
.....<<<<<--<<.....----[[[[[^^>>>>>.----<<<<<<<------------......---------->>>>>>>--...<<<<<<<-------....------->>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<<--------------------------------.....----------------------------->>>>>>...>>>>>><<<...<<<<<<<<.....<<<<<<-------...------>>>>>>.>>>>>>>>..>>>...[.[[[[[.<<<<<.........----.........>>>>>.-......>>>>>>><<<<<<<<---------~~~~~---------->>>>>>>>......]]]]]].<<<<<<<<<------....--->>>>>>>.---<<<<<<<<-....->>>>>>>>-----------------------------------------------------------....>>.--]]..]]]]].
Zro.mL2449 cgcuagggau--AAAA------------UUAUAAUUA---UCAUAUG------------GAUAU-----------CAUAUGA----------------------------------------------GUAAAUUGGGUGAAUUG-CAAGAAAUUCCUUAUAU-----------------------------AUAU--------------------------AUAUUAAGGAUAAUUUGCAGCGAAGCUUAUAACAACCUUCAUAUAUUA---(25)-------UGAUGGUUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGGUU----AACAAUAAUUUAUC-CACGAGUGCCCAAUAUCAAAUAUUUAA----UAA-----UUAAAUAUUUGAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--AUAAUAAUUUAAAUAUUAUUAU--------------------------------------------------GAUAACAU---AAUUG--aacaggguaa
........<<--....------------[[>>.....---<<<<<<<------------.....----------->>>>>>>----------------------------------------------.....<<<<<<<...<<-<<<<....<<<<<<<<<-----------------------------....-------------------------->>>.>>>>>>...>>>>>><<<...<<<<<<<<..........<<<<<---~~~~------->>>>>>>>>>>>>..>>>...[.[[[[[....<<<<<<<<....----.....>>>>>>>>.-......>>>>>>><<<<<<<<<<<<<<----...----->>>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....]..---..>>.--]]........
Zbi.mL2449 cgcuagggau--AUA---------UCCUAUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUUGCU--------GACA--------AGCAAA---------GUAAAUUGGGUGAAUUG-CAAGAAAAUCCUUU--------------------------------UUUU------------------------------AAAGGACAAUUUGCAGCGAAGCUUAUAACAACCU-------------(46)------------GUUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGGUU----AACAAUAAUUUAUC-CACGAGUGCCCGAUAUCAAAUAUUUAA---(817)----UUAAAUAUUUGAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUUAUUUAAAUGUAAUUAC--------------------------------------------------GGUAACAA--AAAUUG--aacaggguaa
.....<<<<<--<<<---------[[[^>^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<--------....-------->>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<<--------------------------------....------------------------------>>>>>>...>>>>>><<<...<<<<<<<<.....-------------~~~~------------>>>>>>>>..>>>...[.[[[[[....<<<<<<<<....----.....>>>>>>>>.-......>>>>>>><<<<<<<<<<<<<<---~~~~~---->>>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....]..--...>>.--.].]]]]...
Tgl.mL2449 cgcuagggau--AAAA-----UUACCUAUUGUCCCA----UUAUAUU------------GUAA------------AAUAUAA--UUAUUCAAUU-------AAUU-------AAUUGAA---------GUAAAUUGGGUGAAUUG-CUUAGAUCUCCUUAUA-------------------------------UUG----------------------------UAUAAGGACAAUAAGCAGCGAAGCUUAUAACAACUUUUAUAUAUAUAUA---------AUAUAUGGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUAAAGUU----AACAAUAAUUCAUC-CACGAGUGCCCAAUAUCAAAUAAAU-----(98)-------AUUUAUUUGAUAAUGAUAUAGUCUAAACAAUUUG------GUAA---CAAAUUGAUAAAUAAAUAUGUAAUAAUAUUUAUAUA---------------------------------------------AUAAUAAUAA----AUUG--aacaggguaa
.....<<<<<--<<..-----[[[[[[.^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<-------....------->>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<<<<-------------------------------...---------------------------->>>>>>>>...>>>>>><<<...<<<<<<<<......<<<<<<<.....--------->>>>>>>>>>>>>>>..>>>...[.[[[[[...<<<<<<<......----.......>>>>>>>-......>>>>>>><<<<<<<<<<<<-----~~~~------->>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.<<.<<<<<<<<......>>>>>>>>.>>---------------------------------------------.......]..----.>>.--]]..]]]]]]
Tpr.mL2449 cgcuagggau--AAAUA--------UUUUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAAUUAAUU---AAUU---AAUUAAUUGAA---------GUAAAUUGGGUGAAUUG-CAAAAAUAUCCUAAUAUUA---------------------------UUAAUU-------------------------UAAUAUGGACAAUUUGCAGCGAAGCUUAUAACAAUCUUCAUAAAUCAUUA---------GUUUAUGGUUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGAUU----AACAAUAAUUUAUC-CACGAGUGCCCAAUAUCAAAUAUU-------UAA--------AAUAUUUGAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUAAUUAAAAAAUUACGAU-----------------------------------------------------AACAA---AAUUG--aacaggguaa
.....<<<<<--<<<..--------[[^^>>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<<<<<---....--->>>>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<..<<<<<<---------------------------......------------------------->>>>>>>>>...>>>>>><<<...<<<<<<<<......<<<<<<<.....--------->>>>>>>>>>>>>>>..>>>...[.[[[[[....<<<<<<<<....----.....>>>>>>>>.-......>>>>>>><<<<<<<<<<<-------...-------->>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<.........>>>>>...-----------------------------------------------------..]..---..>>.--.].]]]....
Tde.mL2449 cgcuagggau--AAA-----UUACCCACUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUUCAAUU-------AAUU-------AAUUGAA---------GUAAAUUGGGUGAAUUG-CUUAGAUCUCCAUAUA-------------------------------AAU----------------------------UAUAUGGACAAUAAGCAGCGAAGCUUAUAACAACUUUUAUAUAUGU----------AUAUAUACGGUUAUAAGAACGUUCAACGACUAGAUGAUGAGUGGAGUU----AACAAUAAUUCAUC-CACGAGCGCCCAAUGUCGAAUAAAU-----(828)------AUUUAUUUGAUAAUGAUAUAGUCUAAACAAUUUG------GUAA---CAAAUUGAUAAAUAAAUAUGUAAUAAUAUUUAUAUA------------------------------------------------AUAAUAA-UAAAUUG--aacaggguaa
.....<<<<<--<<.-----[[[[[[..^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<<-------....------->>>>>>>---------.....<<<<<<<...<<-<<<<....<<<<<<<<-------------------------------...---------------------------->>>>>>>>...>>>>>><<<...<<<<<<<<......<<<<<....---------->>>>>....>>>>>>>>..>>>...[.[[[[[...<<<<<<<......----.......>>>>>>>-......>>>>>>><<<<<<<<<<<<-----~~~~~------>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.<<.<<<<<<<<......>>>>>>>>.>>------------------------------------------------....]..-....>>.--]]..]]]]]]
Kla.mL2449 cgcuagggau--AAAAUA---------UUUGUCCCA----UUAUAUAUAUA--------(23)--------UAUAUAUAUAA--UUAUCCUCGCCU-----(14)-----AGGCGGGGA---------GUAAAUUGGGUGAAUUG-CAAGAAACUCCUAAUAUUAUUA------------------------UUUAU-----------------------UAAUAAUAUGGACAAUUUGCAGCGAAGCUUAUAAUAACCUC(74)U------------------------UUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGGUU----AACAAUAAUUUAUC-CACGAGUGCCCAAUAUUAGAUAAUAU-----UAU------AUAUUAUUUAAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--AUAAUUAAUUAAAAAUAAUUAU---------------------------------------------------AAAACAA---AAUUG--aacaggguaa
.....<<<<<--<<<...---------^^^>>>>>.----<<<<<<<<<<<--------~~~~-------->>>>>>>>>>>--...<<<<<<<<<-----~~~~----->>>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<..<<<<<<<<<------------------------.....----------------------->>>>>>>>>>>>...>>>>>><<<...<<<<<<<.......~~~~.------------------------>>>>>>>..>>>...[.[[[[[....<<<<<<<.....----......>>>>>>>.-......>>>>>>><<<<<<<<<<<<<-----...------>>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........>>>>>>>---------------------------------------------------....]..---..>>.--]].]......
Kdo.mL2449 cgcuagggau--AAAUA----------UUUGUCCCA----UUAUAUAUAUUAU------AUU-------AUAAUAUAUAUAA--UUAUCCUUAAUA-----AAU-------AUUAAGGA---------GUAAAUUGGGUGAAUUG-CAAGAAACUCCUAAUAUUAUUAUUUA--------------------UUUAUUUAUUUAUU-----------UAUUAAUAAUAUGGACAAUUUGCAGCGAAGCUUAUAAUAACCU------------(74)--------------UUAUAAGAACGUUCAACGACUAGAUAAUGAGUUAGGUU----AACAAUAAUUUAUC-CACGAGUGCCCAAUAUUAAAUAUAU-----(28)-------AUAUAUUUAAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--AUAAUUAAUUAAAAAUAAUUAU--------------------------------------------------AUAAACAA---AAUUG--aacaggguaa
.....<<<<<--<<...----------[^^>>>>>.----<<<<<<<<<<<<<------...------->>>>>>>>>>>>>--...<<<<<<<<.-----...------->>>>>>>>---------.....<<<<<<<...<<-<<<<....<<<..<<<<<<<<<..<<--------------------..............----------->>.>>>>>>>>>>>>...>>>>>><<<...<<<<<<<......------------~~~~-------------->>>>>>>..>>>...[.[[[[[....<<<<<<<<....----.....>>>>>>>>.-......>>>>>>><<<<<<<<<<<<-----~~~~------->>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........>>>>>>>--------------------------------------------------.....]..---..>>.--]].]......
Kth.mL2449 cgcuagggau--AAAUA----------UUUGUCCCA----UUAUAUU------------GAAA------------AAUAUAA--UUAUCCCCCGUUCUU-UAAAU--AAGUGAGGGGGA---------GUAAAUUGGGUGAAUUG-CAAGAAUAUCCUAAUAUUA---------------------------UGAAUU-------------------------UAAUAUGGACAAUUUGCAGCGAAGCUUAUAACAAUCUUCAUAUAUAU--------------AUAUGGUUAUAAGAACGUUCAACGACUAGAUAAUGAGUAAGAUU----AACAAUAAUUUAUC-CACGAGCGCCCAAUAUCAAAUAUUUA---(755)------UAAAUAUUUGAUAAUGACAUAGUCUGAACAAUAUA------GUAA---UAUAUUGAA--GUAAUAAUUAAACAAAAUUACG---------------------------------------------------AUAACAU---AAUUG--aacaggguaa
.....<<<<<--<<...----------[^^>>>>>.----<<<<<<<------------....------------>>>>>>>--...<<<<<<...<<<-.....-->>>...>>>>>>---------.....<<<<<<<...<<-<<<<....<<<..<<<<<<---------------------------......------------------------->>>>>>>>>...>>>>>><<<...<<<<<<<<......<<<<<....-------------->>>>>>>>>>>>>..>>>...[.[[[[[<<<<<...........----.........>>>>>-......>>>>>>><<<<<<<<<<<<<---~~~~~------>>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<...........>>>>>.---------------------------------------------------....]..---..>>.--]].]......
Pca.mL2449 cgcuagggau--AAA----------CUCUUGUCCCA----UUAUAUAU-----------(50)-----------AUAUAUAA--UUACUUCUUA------UUAUU-------UAAGAAG---------GUAAAUUGGGUGAAUUG-CAAGGAAGUCCAAUAU-----------------------------AUUAAAG--------------------------AUAUUGGAUAAUUUGCAGCGAAGUUUAUAACGGUUAAAUAUAU-----AUAAAA---AUAUAUUUGUUAUAAAAACGUUCAACGACUAGAUAAUGAGUUUAACC----AACAAUAAUUUAUC-CACGAGCGCCCAAUAUUAAAGAAUU----(756)-------AAUUCUUUAAUAAUGACAUAGUCUGAACAAUA--------(41)-----UAUUGAA--AUAAUACUUUAAAUGGUAUUAU--------------------------------------------------AUAAACAA--AAAUUG--aacaggguaa
.....<<<<<--<<.----------[[.^^>>>>>.----<<<<<<<<-----------~~~~----------->>>>>>>>--...<<<<<<<------.....------->>>>>>>---------.....<<<<<<<...<<-<<<<...<<<<<<<<<-----------------------------.......-------------------------->>>>>>>>>..>>>>>><<<...<<<<<<<<....<<<<<<<<-----......--->>>>>>>>>>>>>>>>..>>>...[.[[[[[<<<<<...<<<.....----...>>>...>>>>>-......>>>>>>><<<<<<<<<<<<----~~~~~------->>>>>>>>>>>>......]]]]]][<<<<<<<--------~~~~----->>>>>..--<<<<<<<<......>>>>>>>>--------------------------------------------------.....]..--...>>.--]].]].....
Ncr.mL2449 cgcuagggau--UUUG-------UCCUUCAAUAUUC---UAUUUAAGGGUG-------(231)--------CAUCCUUAAAU--AAAAUUA----------UUGA----------UAAU-----------AUAUUGGGUUAAUUU-CAAAAAUUACUU--------------------------------UUAUAAUUU-----------------------------AAGUAAAUUUGAAGCGAAA-UUAUCUCAGCAU------------(67)--------------AGAUAAAAUCGUUCAACGACUAUAAGGUGAGUAAUGCU----AACAAUAAUCCUUUA--UUAACACCCAACUUUCUUUUUUU----(1726)-----UAAAAAAGAAAUGAAGAAAUAGUCUGAAACCAUUAU-----GUGA---AUGAUGGAAAUAAAUCAAUAUGAUAACAAGUUGA-----------------------------------------------------ACAG---GCUAA--aacaggcuaa
.....<<<<<--<...-------.[[[[.>>>.>>>---.<<<<<<<<<<<-------~~~~~-------->>>>>>>>>>>--...<<<<----------....---------->>>>-----------...<<<<<<<...<<-<<<<..<<<<<<--------------------------------.........----------------------------->>>>>>.>>>>>><<<...-<<<<<<......------------~~~~-------------->>>>>>...>>>...[.[[[[[<<<<<.<<.<<.<<..----..>>.>>.>>>>>>>--....>>>>>>><<<..<<<<<<<----~~~~~~-----..>>>>>>>>>.>......]]]]]][.<.<<<<<<<-----....--->>>>>>>.......<<<<<.<<....>>.>>>>>-----------------------------------------------------.]..---..>..--]]..]]....
Eni.mL2449 cgcuagggau--UUUUAA------CUGUAAGUCC------UCCAAUAUA----------UAA-----------UAUAUUGG---------------------------------------------AAAUAUAUUGGGUAAAUUU-CAAAAAUAACUUAU---------------------------------GUUU-----------------------------AUAAGUGUAUUUGAAGCGAAACUUAUUUUUAGCAAU----------(28)------------AAAAAUAAGAACGUUCAACGACUAAAAGGUGAGUAUUGCU----AACAAUAAUCCUUU--AAUCAUGCCCAA(30)AAUAAUUAUUAUUAUUU--------UAAUAAUAAUAAUGAAAUAGACUUGGUUAUAUAUCAAGCU(1328)AGUUUGAA---CCAUUUU---AAGA-AAAGUGGAAAUAAAAGAAAAACUUUUAU-----------------------------GAUAACAA---AAUUG--aacaggcuaa
......<<<<--<<....------[[[[>>>>>>------.<<<<<<<<----------...----------->>>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<....<<<<<<---------------------------------....----------------------------->>>>>>...>>>>>><<<...<<<<<<<<<......----------~~~~------------>>>>>>>>>..>>>...[.[[[[[<<<<<....<<<<<..----..>>>>>..>>>>>--.....>>>>>>>~~~~....<<<<<<<<<<...-------->>>>>>>>>>.......]]]]]][<<.......<<<<<<<~~~~~~>>>>>>>.---<<<<<<<---....->>>>>>>..<<<<<<<.....>>>>>>>-----------------------------.....]..---..>>.--.]]]].....
Pch.mL2449 cgcuagggau--UUAUAAC------UGUGAGUCC------UCCAAUAUU----------AUAA----------AAUAUUGG---------------------------------------------UAAUAUAUUGGGUAAAUUU-CAAAGACAACUUA--------------------------------UAUUAAU-----------------------------UAAGUGUAUUUGAAGCGAAACUUAUUUUAGCAUGUGUUUAUCU---UUA----AGAUAAAUUAAAAUAAGGACGUUCAACGACUAAAAGGUGAGUAUAGCU----AACAAUAAUCCUUU--UUUAACGCCCAACAUCUUUAUUAAU---(1371)-----AUUAAUAAAGAUGAUGAAAUAGUCUGAACCGUUUU------GAGA---AAAAUGGAAAUAAAAGUAUAUUUGGCUUCUAGCUGAAUCUUUUAU--------------------------------------GAUAACAU--AAAUUG--aacaggcuaa
......<<<<--<<<<...------[>^^>>>>>------.<<<<<<<<----------....---------->>>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<.<<<.<<<<--------------------------------.......----------------------------->>>>>>>.>>>>>><<<...<<<<<<<<<......<<<<<<<<---...---->>>>>>>>>>>>>>>>>..>>>...[.[[[[[<<<<<....<<<....----....>>>..>>>>>--.....>>>>>>><<<<<<<<<<<<<---~~~~~~----->>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..<<<<<<<...<<<<<<<<...>>>>>>>>>>>>>>>--------------------------------------.....]..--...>>.--..]].]....
Pur.mL2449 cgcuagggau--UUAUAAC------UGUGAGUCC------UCCAAUAUU----------AUAA----------AAUAUUGG---------------------------------------------UAAUAUAUUGGGUAAAUUU-CAAAGACAACUUA--------------------------------UAUUAAU-----------------------------UAAGUGUAUUUGAAGCGAAACUUAUUUUAGCAUGUGUUUAUCU---UUA----AGAUAAAUUAAAAUAAGGACGUUCAACGACUAAAAGGUGAGUAUAGCU----AACAAUAAUCCUUU--UUUAACGCCCAACAUCUUUAUUAAU---(1378)-----AUUAAUAAAGAUGAUGAAAUAGUCUGAACCGUUUU------GAGA---AAAAUGGAAAUAAAAGUAUAUUCAGCUUUUAGCUGAAUCUUUUAU--------------------------------------GAUAACAU--AAAUUG--aacaggcuaa
......<<<<--<<<<...------[>^^>>>>>------.<<<<<<<<----------....---------->>>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<.<<<.<<<<--------------------------------.......----------------------------->>>>>>>.>>>>>><<<...<<<<<<<<<......<<<<<<<<---...---->>>>>>>>>>>>>>>>>..>>>...[.[[[[[<<<<<....<<<....----....>>>..>>>>>--.....>>>>>>><<<<<<<<<<<<<---~~~~~~----->>>>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..<<<<<<<...<<<<<<<<...>>>>>>>>>>>>>>>--------------------------------------.....]..--...>>.--..]].]....
Pma.mL2449 cgcuagggau--UUAGC---------UUAAGUCCCC------UAAUAUC----------AUAA----------GAUAUUA---------------------------------------------UAUAUAAUUUGGGUAAAUUU-CAAAAACAACUU-----------------------------------UAA--------------------------------AAGUGAAUUUGAAGCGAAACUUAUUUUAGCUUUAAUUUUAUAU--UUU----AUAUAAAAUAAAAUAAGGACGUUCAACGACUAAAAGGUGAGUAUUGCU----AACAAUAAUCCUUAUUAGAUACGCCCAACAUCUUUAUA------(1400)--------UAUAAAGAUGAAGAAAUAGUCUGAACCAUUUU------UUGA---AAAAUGGAA--AUAAA------UAU---UUUAU--------------------------------------------------GGUAACAA--AAAUUG--aacaggcuaa
.....<<<<<--<<<..---------[^>>>>>>>.------<<<<<<<----------....---------->>>>>>>---------------------------------------------........<<<<<<<...<<-<<<<....<<<<-----------------------------------...-------------------------------->>>>...>>>>>><<<...<<<<<<<<<.......<<<<<<<<--...---->>>>>>>>>>>>>>>>>..>>>...[.[[[[[.<<<<....<<<<<..----..>>>>>..>>>>........>>>>>>><<<<<<<<<<------~~~~~~-------->>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<------...--->>>>>--------------------------------------------------.....]..--...>>.--]]........
Slu.mL2449 cgcuagggau--AAA---------UUUGUUGUCCU-----UCUUAA-----------UUGAAAAU-----------UUAAG-------------------------------------------AUCAAUAAACCAGGUGAAUUG-CAAAAAGGACUUAAAUUAAUUUAUAA---------------------(55)-----------------UUAUGGAAAUAAAGAAGUUAAUUUGCAGCGAAGCUUAUUUA---------------ACCAUUUAAUA--------UAAAUAAGAACGUUCAACGAUUAGAAAGUGAGUUAUGGU----AACAAUAAUCUUUC-CACGAGUGCCUGGCAUCUACUAUGGUU---(170)-----AACCAUUAAGAUGAUGACAUAAUCUGAACAGUAAU------GUAA---AUUACUGAA--GUAAUGAAUAAAUAAUCAUUAC--------------------------------------------------GAUAACAA-UUUUUUG--aacaggcuga
.....<<<<<--<<.---------[[[[^^>>>>>-----.<<<<<-----------........----------->>>>>-------------------------------------------.........<<<<<<<...<<-<<<<...<<<<<.......<<<<<<<---------------------~~~~----------------->>>>>>>.......>>>>>..>>>>>><<<...<<<<<<<<---------------...........-------->>>>>>>>..>>>...[.[[[[[<<<<<...<<<<<...----....>>>>>>>>>>-......>>>>>>><<<<<...<<<<<<---~~~~~----->>>>>>..>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........>>>>>>>--------------------------------------------------.....]..-....>>.--]]]]]]....
Aae.mL2449 cgcuagggau--AAA---------UUUGUUGUCCAU----UUGCUUU------------GAGA-----------AAAGCAA---------------------------------------------UAUUAAAUAGGGUGAAAUG-CAAAAACAACUUA---------------------------------GUUAA------------------------------UAAGUCAAUUUGCAGCGAAGCUUACCUAAGCA-------------(47)--------------AGGUUAGAACGUUCAACGACUAGAAAGUGAGUAUGCU-----AACAAUAAUCUUUC-CACGAGCGCCCCUACGUCUUUUU-------(240)---------CAAAAGACGAUGACAUAGUCUGAACCAUUUA------GUAA---UAAAUGGAA--AUUAAGGAUAAAGAGCCUUAAU-------------------------------------------------AUUUAACAU---UUUUG--aacaggcuga
......<<<<--<<.---------[[[[^^>>>>..----<<<<<<<------------....----------->>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<....<<<<<---------------------------------.....------------------------------>>>>>...>>>>>><<<...<<.<<<<.....-------------~~~~-------------->>>>.>>..>>>...[.[[[[[....<<<<<......-----...........>>.->>>...>>>>>>>.<<<<<<<<<-------~~~~~--------->>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........>>>>>>>-------------------------------------------------......]..---..>>.--]]]]]]....
Cne.mL2449 cgcuagggau--AAA(13)------CUCUUGUCCCUAGA-------------------------------------------(387)----------------------------------------------UGGGGAAAUAAG-GAAUAUGCUUACU---------------------------------(100)-------------------------------AGUAAAGAUUCCUGCUUUU-------------------------(445)-------------------AGAAGUUCAACGACUAACUGGUGAGUAAUACUA--(23)-UAGCACUACUUCAAUUACUCCCCGUAUU--------------UGUU-----------GAUAGUGAUGACAUAGUCUAAACUGUAUA------GUGA---UAUGCAGUA--GAAGU-CUUAAAAGCUUCUAAU-----------------------------------------------------AAUAU--UUUUUG--aacaggguua
..<<<<<<<<--<<.~~~~------[[.^^>>>>>>>>.-------------------------------------------~~~~~----------------------------------------------<<<<<<....<<-<<<<....<<<<<---------------------------------~~~~~------------------------------->>>>>..>>>>>><<<<<<-------------------------~~~~~------------------->>>>>>...[.[[[[[..<<<<<<<<<...<<<--~~~~->>>...>>>>>..>>>>.>>>>>><<<<--------------....----------->>>>.........]]]]]][<<<<<<<<<------....--->>>>>>>>.--<<<<<-.......>>>>>....-----------------------------------------------------..]..--....>.--]].]].....
Ama.mL2449 cucuagggau--UAACUGC----------GGUCCCA----CAAGAUC------------GGAA-----------GGUCUUG------UUAAA---------(67)---------UUUGA--------GUUGAAUCGGGUGAAUUGUCAAAGACGCUAAGGGG----------------------------AGAAUCGAGA-----------------------UCCCUACGCCAAUUUGCAGCGAAGCUUGUUUCGGUUUGAUGAUGAUU---UUCG--GAUCUCAUUUGGAGCAAGAACGUUCAACGACUAGGUGGUGAGUACAACC----AACAAUAAUCCACC-CACGAGCGCCCGACAACCAU-----------AUAU-----------AUGGUUGAUGACAUAGUCUGAGCAAAUAG------GAAA---CUAUUUG-GGAGGGGUUUAAAUACUCAUCCAAU-----------------------------------------------------AACAU---AACUG--aacaggcuga
.....<<<<<--<......---------->>>>>>.----<<<<<<<------------....----------->>>>>>>------<<<<<---------~~~~--------->>>>>--------......<<<<<<<...<<.<<<<...<<..<<<<<----------------------------..........----------------------->>>>>..>>...>>>>>><<<...<<<<<<<<......<<<<.<<<<---....-->>>>>>>>..>>>>>>>>..>>>...[.[[[[[<<<<<...........----.........>>>>>-......>>>>>>><<<<<<<-----------....----------->>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>-<<<.<<<<......>>>>.>>>...-----------------------------------------------------..]..---..>>.--..........
Ceu.mL2449 cgcuagggau--AAAAAA-----------UGUCCCA----UUAAUUC------------GUGA-----------GAAUUAA--------------------------------------------GUAAUAAAUCGGGUGAAUUG-UCGGCAUUUAA----------------AGUGUCGAAUCA(130)GAAAGCUA(10)A-GCGUCUAAUAUGC---------------CAACUUGCAGCGAAGCAUGUUAUUC------------AAGAGAUAAAA-------GUAAUACAUGAACGUUCAACGACUAGAAAGUGAGAAAUCUCU--UUUCAAUAAGCUUUC-CACGAGCGCCCGACAACUAAAU---------(23)---------AUUUAGUUGAUGACAUAGUCUGAUCUUAUAG------GAAA---CUGUAAGA--GUAAUGUGAUAAACACACAUUACGUAAUAAUUGUAUUUGAUUAUUACAGCAUUAUAAAUGC------------GUUAACAU---AAAUG--aacaggcuag
.....<<<<<--<.....-----------^>>>>>.----<<<<<<<------------....----------->>>>>>>--------------------------------------------........<<<<<<<...<<-<.<<.......----------------<<<.<<......~~~~~>>..>>>.~~~~.-<<<<.....>>>>---------------...>>.>>><<<...<<<<<.<<<<------------...........------->>>>.>>>>>..>>>...[.[[[[[<<<<<<..<<<<.....-->>>>.....>>>>>>-......>>>>>>><<<<<<<<<---------~~~~--------->>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.--<<<<<<<<.......>>>>>>>><<<<<<<<<<....>>>>>>>>>>.<<<<<...>>>>>------------.....]..---..>>.--].........
Cmo.mL2449 cgcuagggau--AAAAAA-----------UGUCCCA----UUAAUUC------------GUGA-----------GAAUUAA--------------------------------------------GUAAUAAAUCGGGUGAAUUG-UCGGCAUUUAA----------------AGUGUCGAAUCA(121)GAAAGCUA(10)A-GCGUCUAAUAUGC---------------CAACUUGCAGCGAAGCAUGUUAUUC------------AAGAGAUAAAA-------GUAAUACAUGAACGUUCAACGACUAGAAAGUGAGAAAUCUCU--UUUCAAUAAGCUUUC-CACGAGCGCCCGACAACUAAAU---------(23)---------AUUUAGUUGAUGACAUAGUCUGAUCUUAUAG------GAAA---CUGUAAGA--GUAAUGUGAUAAACACACAUUACGUAAUAAUUGUAUUUGAUUAUUACAGCAUUAUAAAUGC------------GUUAACAU---AAAUG--aacaggcuag
.....<<<<<--<.....-----------^>>>>>.----<<<<<<<------------....----------->>>>>>>--------------------------------------------........<<<<<<<...<<-<<<<.......----------------<<<.<<......~~~~~>>..>>>.~~~~.-<<<<.....>>>>---------------...>>>>>><<<...<<<<<.<<<<------------...........------->>>>.>>>>>..>>>...[.[[[[[<<<<<<..<<<<.....-->>>>.....>>>>>>-......>>>>>>><<<<<<<<<---------~~~~--------->>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.--<<<<<<<<.......>>>>>>>><<<<<<<<<<....>>>>>>>>>>.<<<<<...>>>>>------------.....]..---..>>.--].........
Cbr.cL2449 cucuagggau--GAAA---------UGUU-GUCCCG----CUUAGUG------------GUAA-----------CACUAAG--------------------------------------------GCAAC-AAUUGGGUGAAUUG-CAAAAAUAGCUAAGUGA----------------------------CUUAAAAAU------------------------UCAUAUGCCAAUUUGCAGCGAAGCUCGGUGAAACA-------------CAAAAA---------UGUAACCGAGAACGUUCAACGACUAGAGAGUGCGGAUG---UGCAACCAAUAAUCUCUC-CACGAGUGCCCAACAACUUAAC-----UAA(760)AUUU-----GUUAAGUUGAUGACAUAGUCUGAACUUUUAG------GAAA---CUAAAAGA--UACAAAAGAUAAAGAGCUUUUGUG--------------------------------------------------AUAACAC----AAUG--aacaggcuga
.....<<<<<--<<..---------[[^^->>>>>.----<<<<<<<------------....----------->>>>>>>--------------------------------------------.....-..<<<<<<<...<<-<<<<....<<...<<<<----------------------------.........------------------------>>>>..>>...>>>>>><<<...<<<<<<...<<<-------------......--------->>>.>>>>>>..>>>...[.[[[[[<<<<<<<<<....--->>>>.........>>>>>-......>>>>>>><<<<<<<<<-----...~~~~~....----->>>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>.--<<<<<<<<........>>>>>>>>--------------------------------------------------....]..----..>.--]]]]......
Cps.cL2449 cucuagggau--AAAA---------UGUUAGUCCU-----CUUCAACA-----------GUAA----------UGUUGAAG--------------------------------------UGAGUAUAAACAAACUCGGUGAAUUG-CGAGAAAGGCUAAAGC-------------------------------GUUUU---------------------------GCUAUGCUAACCCGCAGCCAAGCUACAGUCUUGGUCGUGU--------AAUU------ACACGUGAUUGUAGAAGGUUCAACGACUAGGGUUGCACUUACCAA---AAGUUAUAAUACCCA--UGUAGCGCCGAGUAACCAGUA--------(174)---------UACUGGUUAAAGUUAUAGUCUGCACUUACGU------GAAA---GCGUAAGA--GUUUAUAAGUGAAAGCUUAUAAACUAUAUAAGUAGUUAAAACACUUGUAU------------------------AUAACAA----AAGG--aacaggcuga
......<<<<--<<..---------[[^^.>>>>.-----<<<<<<<<-----------....---------->>>>>>>>--------------------------------------..............<<<<<<<...<<-<<.<...<<<...<<<-------------------------------.....--------------------------->>>..>>>..>.>>>><<<...<<<<<<<<.....<<<<<--------....------>>>>>.>>>>>>>>..>>>...[.[[[[[<<<<...<<<<.....--->>>>.......>>>>--.....>>>>>>><<<<<<<<<--------~~~~~--------->>>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>.--<<<<<<<<<<....>>>>>>>>>>.<<<<<<<<.<<....>>>>>>>>>>------------------------....]..----..>.--]]]]......
Csp.cL2449 cucuagggau--UAA---------CUGUUAGUCCU-----CCUUCUA------------GUAA----------UAGCAAGG--------------------------------------UGAGUAUAAACAAACACGGUG111UCUCGGGAAUCGCUAAGGUAGAC---------------------------GCGA------------------------GUUUACUAUGCCAACCCGCAGCCAAGCUAAUAUCUUGGUGGUGCAAUAG--CAAAACCUACUGCAUCAGAUAUUAGAAGGUCCAACGACUAGUAUUGCGCCCGCCAAA---GGCAAUAAUAUACA---CUAGCGCCGUGUAACCAAAC---------(64)---------GUUUGGUUAAAGAUAUAGUCUGCUCUUAAGG------GAAA---CCUUAAGAAA-GCCUAGG-AGAAAUGCCUAGGACUAUAACUCAUAAAAUAUGAGUUAU--------------------------AUAACAA----UAGG--aacaggcuga
......<<<<--<<<---------[[[^^>>>>>.-----<<<<<<<------------....---------->>>.>>>>--------------------------------------..............<<<<<<<~~~<..<<<<....<<...<<<<<<<---------------------------....------------------------>>>>>>>..>>...>>>>.><<<...<<<<<<<<<....<<<<<<.<<<--......>>>.>>>>>>>>>>>>>>>..>>>...[.[[[[[.<<<<<<..........---..>>>>>>......---....>>>>>>><<<<<<<<<---------~~~~--------->>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>...-<<<<<<<-.......>>>>>>.>.<<<<<<<<<<...>>>>>>>>>>--------------------------....]..----.>>.--]]]]].....
Cpa.cL2449 cucuagggau--UAAA---------UGUUAGUCCU-----CCUGAACG-----------GCAA----------CGUUCAGG--------------------------------------UGAGUAUAAACAAACUCGGUGAAUUGUCGGGAAUAGCUAAAGCUUUA---------------------------(81)------------------------UAAAGCUACGCCAACCCGCAGCCAAGCAUUACCCUUGGUCAUG---------UUCG-------CAUGUGGGUAGUGAAGGUUCAACGACUAGGAGUGCGCUUACCAA---AAGCAAUAAUAUCCA--CGUAGCCCCGAGUAACCAGA---------(116)----------UCUGGUUAAAGAUAUAGUCUGCACUUACGU------GAAA---ACGUAAGA--GAUUAUAAGUGAAAACUUAUAAUC------------------------------------------------(63)AACAG----AAGG--aacaggcuga
......<<<<--<<<.---------[[^^>>>>>.-----<<<<<<<<-----------....---------->>>>>>>>--------------------------------------..............<<<<<<<...<<.<<<<....<<...<<<<<<<---------------------------~~~~------------------------>>>>>>>..>>...>>>>>><<<...<<<<<<<<.....<<<<---------....------->>>>.>>>>>>>>..>>>...[.[[[[[<<<....<<<<.....--->>>>.......>>>.--.....>>>>>>><<<<<<<<---------~~~~~---------->>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>.--<<<<<<<<<<....>>>>>>>>>>------------------------------------------------~~~~..]..----..>.--]]]]......
Col.cL2449 cucuagggau--UAA----------UGUUAGUCCU-----CUCCAGCA-----------GUAA----------UGCUGGAG--------------------------------------UGAGUAUAAACAAACUGGGUGAAUUGCAAGGAAGCUAAGGAC--------------------------------UAAU---------------------------GUCUACGCCAAUUUGCAGCGAAGUUGAUAAAUAC------------AAAUACAUA---------GUAAUCAAGAACGUUCAACGACUAGGGAGUGCGGAUUUGU---AGCCAAUAAGCUCCC-CACGAGUGCCCGGCAACUCUU--AAGAAGAAUU(911)ACA----AAGAGUUGAUGACAUAGUCUGAGCUUUUGG------GAAA---CCAAAAGA--AGUUGAAGAUAAACAUGUCAGCUAAUUCU(59)AGAAU-----------------------------------CUUAACAC---ACCUG--aacaggcuga
......<<<<--<<.----------[[[^>>>>>.-----<<<<<<<<-----------....---------->>>>>>>>--------------------------------------..............<<<<<<<...<<<.<<<..<<...<<<<--------------------------------....--------------------------->>>>..>>...>>>>>><<<...<<<....<<<<------------.........--------->>>.>>>>...>>>...[.[[[[[<<<<<<..<<......---..>>.....>>>>>>-......>>>>>>><<<<<<<<--..........~~~~~...---->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.--<<<<<<...........>>>>>>.<<<<<~~~~>>>>>-----------------------------------.....]..---..>>.--]]]]......
Dpa.cL2449 cucuagggau--UAA----------UGUUAGUCCCA----UCUUAGA------------GAAA-----------UCUAAGA------------------------------------------AACAACAAAAUCGGGAUAAAUG-CAAAGAAAGUUUACAUAAUA-------------------------UCUAAUAU-------------------------UAUUAUGCCAAUUUGCAGCGAAGUUACU--------------------CCAUCAAA-----------AGUAAGAACGUUCAACGACUAGGAAU---------------AACAAUUCCC------ACGAGACCCCGACAGCUUA----------(1003)----------UAAGCUGAUGACAUAGUCUGAGCUUACCU------UAAA---AGGUAAGAA--GUAUAGUAUAAACA-ACUAUAC--------------------------------------------------GAUAACAU---AUCUG--aacaggcuga
.....<<<<<--<<.----------[[[^>>>>>>.----<<<<<<<------------....----------->>>>>>>------------------------------------------..........<<<<<<<...<<-<<<<.........<<<<<<<-------------------------........------------------------->>>>>>>....>>>>>><<<...<<<<<--------------------........----------->>>>>...>>>...[.[[[[[<<<<<---------------....>>>>>.------.....>>>>>>><<<<<<<----------~~~~~~---------->>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<.......->>>>>>>--------------------------------------------------.....]..---..>>.--]]]]......
Cec.cL2449 cucuagggau--AGUUUA--------UUUUGUCCC----CUCUUAGG------------GUGA-----------CCUAAGAG-------------------------------------------UAAAAUAACUGGGUGAAUUGUCAAGAAAGACUGCGACUUGU----------------------------AAC--------------------------ACAAGAAGUCAACUUGCAGCCAAGCUUUGCUAAAUUCAUAGU--------(29)-------GCUAAUAGCACUGAAGGUUCAACGACUAGGGCUUGAGUAGAAUUA---AACAAUAAUAGCCC-CACGAGCGCCCAGCAACUUAUUAUU-----(569)----AGUAUUAUAAGUUGAAGACAUAGUCUCAGCUUUAUG----GUGCUUAA-CAUAAAGA--AAUAGCU---(47)--AGCUAUU---------------------------------------------------GUAAGAU----UCUG--aacaggcuga
.....<<<<<--<<....--------[.^^>>>>>----<<<<<<<<------------....----------->>>>>>>>-------------------------------------------........<<<<<<<...<<.<<<<...<<<<....<<<<<----------------------------...-------------------------->>>>>.>>>>..>>>>>><<<......<<<<<......<<<<--------~~~~------->>>>.>>>>>.....>>>...[.[[[[[<<<<<............---.........>>>>>-......>>>>>>><<<<<<<.<<<<-----~~~~~---->>>>.>..>>>>>>......]]]]]][<<<<<<<<<----........->>>>>>>.--<<<<<<<---~~~~-->>>>>>>---------------------------------------------------....]..----.>>.--]].]......
Pbi.cL2449 cucuagggau--AAAAUAC---------UUGUCUCA----UCUACUA------------GAAA-----------UAGUAGA--------------------(51)--------------------AAACGCAACUAAGUGAAUUG-CAAGAAAUGCUUCAGCUUCUUCGC-----------------------(323)-------------------GCGAAGACGGCCAGCAAACUUGCAGCAAAGCUGCUC-------------ACAAGAGGGAGGUU(36)-------GAGCAGAAUGUUCAACGACUAGGAAAAAAACAACCUC----AAAUUUAA---UUCC-AGUAGUGCUUAGUGACUUAUGU--------(88)------ACAAAUAAGUUAAUGACAUAGUCUGACCUCUUAU------GAAA---GUAAGAGAUUUUGAUAAAUAAAUAUUUAUUUAUCAAAACGAAUU--(129)--AAUU--------------------------AGUAACAU---AUGUG--aacaggcuga
.....<<<<<--<<.....---------^^>>>>>.----<<<<<<<------------....----------->>>>>>>--------------------~~~~--------------------........<<<<<<<...<<-<<<<...<<<<...<<<<<<<<<<-----------------------~~~~~------------------->>>>>>>.>>>.>>>>..>>>>>><<<...<<<<<<-------------..............~~~~------->>>>>>..>>>...[.[[[[[<<<<............----........--->>>>-.....>>>>>>><<<<<<<<<<--------~~~~------>>..>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.<<<<<<<<<<<<<....>>>>>>>>>>>>>..<<<<--~~~~~-->>>>--------------------------.....]..---..>>.--]]........
Ptu.cL2449 cucuagggau--GAACA----------GUUGUCCCG----CUUAACG------------GUAA-----------CGUUAAG--------------------------------------------GCAAUAAACUGGGUGAAUUG-CAAGAACCGCUAAAGC-------------------------------GAAA----------------------------GCUAUGCAAACUUGCAGCGAAGUUAUUGAACAU--------------GCAUCAAAA-----AUGUAAAUAAGAACGUUCAACGACUAGAAAGUGAGGAUAUGCAAAAACCAAUAAUCUUUUC-AAGAGUGCCCGGCUUCUUUC----------CUC-----------GAAAGAAGAUGACAUAGUCUGAACUUAUAG------GAAA---CUAUAAGAA--GAAAAAGAUAAACC-CUUUUUC----------------------------------------------------GUACAC--AAUUUG--aacaggcuga
.....<<<<<--<<...----------[^^>>>>>.----<<<<<<<------------....----------->>>>>>>--------------------------------------------........<<<<<<<...<<-<<<<....<<...<<<-------------------------------....---------------------------->>>..>>...>>>>>><<<...<<<<<..<<<<--------------.........----->>>>.>>>>>...>>>...[.[[[[[<<<<<.<<..<<.<<.......>>>>..>>>>>>>-.....>>>>>>><<<<<<<<----------...----------->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<.......->>>>>>>----------------------------------------------------...]..--...>>.--]]].......
Pwi.mL2449 cgcuagggau--U--------UAGUUUGUAGUCCCG----CUUUAUA------------GAGA-----------UAUAAGG--------------------------------------------GCAAU-AACUGGGUGAAUUG-CAAGAAGGCUGUGUAAACAUUAUAU----------------------AAUA--------------------AUAUUUGUUUAUUGCUAAUUUGCAGCGAAGUUCUUCGAAUAGAUAAAUUAAUA---(44)-------UAUUGUAGAAGAAAACGUUCAACGACUAGAGAAUGAGGAUAUCUU---ACCGAUAAUUUCUC-CACGAGCGCCCGGCAACUUAUAUUAA-----(30)-------UUAAUGAGUUGAUGACAUAGUCUGAACUAAAUG------GAAA---CAUUUAGAA--GUAAAAAAUAAAGAGUUUUUAC--------------------------------------------------GGUAACAU---AAUUG--aacaggcuaa
.....<<<<<--<--------[[[[[[[[>>>>>>.----<<<<<<<------------....----------->>>>>>>--------------------------------------------.....-..<<<<<<<...<<-<<<<..<<<...<<<<<<<..<<<<----------------------....-------------------->>>>.>>>>>>>.>>>..>>>>>><<<...<<<<<<............<<<<<---~~~~------->>>>>..>>>>>>..>>>...[.[[[[[<<<<<...<<.......---.>>......>>>>>-......>>>>>>><<<<<<<<..<<<-----~~~~------->>>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........>>>>>>>--------------------------------------------------.....]..---..>>.--.]]]]]]]].
Lmu.mL2449 cgcuagggau--G--------------UUUGUCCCU----UAAUCUUUUAGUG------UACA-----CACAAAAGAAUUA---------------------------------------------UUAUAAAUUGGGUAAAUUU-CAAGAAUUACUACGUA-----------------------------AAUUAAAGC-----------------------UACGAUAGUAAACUUGAAGCGAAAUUUAUCUUA----------------GCAUAAUA-------UAAGAUAAAAA-CGUUCAACGACUAUUUGGUGAGUGUUAU--(29)-UAAUCCUUUAUUA-----CUACCCAACAUUUUA----------(1424)----------UAAAAUGAAGACAUAGUCUGAACCAGUUU------GAAA---GAAUUGGAA--AUUA-----UUUA-----UGAU-----------------------------------------------------AACAA----AUAG--aacaggcuaa
.....<<<<<--.--------------[[[>>>>>.----<<<<<<<<<.<<<------....----->>>>>>>>.>>>>---------------------------------------------.......<<<<<<<...<<-<<<<..<<<<<<<<<<-----------------------------.........----------------------->>>>.>>>>>>.>>>>>><<<...<<<<<<<<<----------------........------->>>>>>>>>..->>>...[.[[[[[..<<<<<<<.<.<<<--~~~~->>>>.>.>>>>>>-----.>>>>>>><<<<<<<----------~~~~~~---------->>>>>>>......]]]]]][.<<<<<<<<------....--->>>>>>>..--<<<<-----....----->>>>-----------------------------------------------------..]..----.>..--]].]......
Hje.mL2449 cgcuagggau--GU--------------UUGUCCUU----UAAUAUUUUAUU-------UAUA-----AAUAAAAUUAUUA---------------------------------------------AUAUAAAUUGGGUAAAUUU-CAAGAAUUACUA---------------------------------AUAAUAA------------------------------UAGUAAACUUGAAGCGAAGUUUAUCUUA------------GCAUAUAUUA----------UAAGAUAAAAACGUUCAACGACUAUAAGGUGAGUGAUAUGCAAUACACAAUAAUCCUU-UAAUACCACCCAACAUUUUUAUU-------(1483)-------AAUAAAAAUGAAGACAUAGUCUGAACCAUUUU------UAAA---GAAAUGGAAAUAUAAAAAUAUGAUAACAUA------------------------------------------------------------------CAG--aacaggcuaa
....<<<<<<--..--------------[[>>>>>>----<<<<<<<<<<<<-------....----->>>>>>>.>>>>>---------------------------------------------.......<<<<<<....<<-<<<<..<<<<<<---------------------------------.......------------------------------>>>>>>.>>>>>><<<...<<<<<<<<<------------..........---------->>>>>>>>>..>>>...[.[[[[[.<<<<...<<<.<<<...>>>>>>......>>>>-.......>>>>>><<<<<<<<<<-------~~~~~~------->>>>>>>>>>......]]]]]]<..<<<<<<<------....--->>>>>>>...........<<<<....>>>>------------------------------------------------------------------>..--]]........
Slu.mL2504 aaauugcgau--AGUUUAA---------AUGUCGCU----UAAAUUA------------GAAA-----------UAAUUUA------------------------------------------UUAUGAAAAAUUGGGUUAAUUU-UAAGAAAGUCUCUAAAAUUAUAAUUA---------------------(37)--------------------UAAUUAUAAUAGAGAAAACUUGAAGCGAAGCUAGUUUAG--------------GCAUAAAAUAAA------UUAAACUAGAACGUUCAACGACUAGUAGGUGAGUGCAAAAUGUCCACAAUAAUCCUAC-CACGAAAGCCCAACAACUA------------(26)------------UAGUUGAUGACAUAGUCUGAUCCUAUUU------GUGA---AAAUAGGA--AGCUUAUAAUAAAGAAUUUAAGCU-------------------------------------------------AAUAACAU----AAUG--gucgacuuau
.....<<<<<--<......---------[^>>>>>.----<<<<<<<------------....----------->>>>>>>------------------------------------------..........<<<<<<<...<<-<<<<....<<<<<<...<<<<<<<<<---------------------~~~~-------------------->>>>>>>>>>>>>>>...>>>>>><<<...<<<<<<<<<--------------............------>>>>>>>>>..>>>...[.[[[[[<<<<<...<<<..........>>>.....>>>>>-......>>>>>>><<<<<<------------~~~~------------>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.--<<<<<<............>>>>>>-------------------------------------------------.....]..----.>>.--]]........
Cne.mL2504 ccaccucgau--UAUUUUU----GAGUUUAGUCGAGG----------------------------------------------------------------------------------------CUAAUAAAUCAGGUGAAUUG-CAAGAAACUCUUAG---------------------------------GAAA-----------------------------CUAAGACAAUUUGCAGCCAAGUUCAGUCG----------------AGUAUUAAUA--------CGACUGAAAAGGUUCAACGACUAGAAGGUGAGUUAUACU----AACAAUAAUCCUUC-CAAGAGCGCCUGACAAUUACU---------(158)----------AGUAAUUGAUGACAUAGUCUAAUUUGCUGG------GUAA---CUAGUGAU----GUAAUAUUAAAAA---AUUACACUAUAUUUUAAUAUAG------------------------------------AUUAA---UAAUG--gucgacucau
...<<<<<<<--<<.....----[[[[[>^>>>>>>>----------------------------------------------------------------------------------------........<<<<<<<...<<-<<<<....<<<<<<---------------------------------....----------------------------->>>>>>...>>>>>><<<...<<<<<<<<----------------..........-------->>>>>>>>..>>>...[.[[[[[<<<<<...<<<<<...----....>>>>>>>>>>-......>>>>>>><<<<<<<<---------~~~~~---------->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.----<<<<<........--->>>>>.<<<<<<....>>>>>>------------------------------------..]..---..>>.--.].]]]]]..
Ama.mL2504 gcaccucgau--GAAA----------UGAAGCUCGGCA--AAAAUC-------------GUGA------------GAUUUU--------------------------------------------GAUGAAAAUUGGGUGAAUUGUCAAGAAGACUAAGGAUAGUUAUAUAAUU-------------------(38)--------------AAUUAUAUUGAUUAUCUAUGUUAACUUGCAGCGAAGCUUAUUUUUGCAUACUAAAGUAC--GUA--GUACUCUGGUUUGAAAUAAGAACGUUCAACGACUAGGUGGUGAGUAGUGCA----AACAAUAAUCCACC-CACGAGCGCCCGACAACUUAUUAC-----AUUAUCC------GUUUUAAGUUGAUGACAUAGUCUGAACAUGUAU------GAAA---AUACAUGAA--GAUUGGGUUAAAUU--CCUGAUC-------------------------------------------------GAUAACAU---AUUUG--gucggcucau
....<<<<.<--....----------[[[.>.>>>>..--<<<<<<-------------....------------>>>>>>--------------------------------------------........<<<<<<<...<<.<<<<..<<<...<<<<<<<<<<<<<<<<-------------------~~~~-------------->>>>>>>.>>>>>>>>>..>>>..>>>>>><<<...<<<<<<<<.....<<<<.<<<<<--...-->>>>>.>>>>..>>>>>>>>..>>>...[.[[[[[<<<<<...<<.<<...----.>>.>>...>>>>>-......>>>>>>><<<<<<<..<<-----.......------>>..>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<.......-->>>>>>>-------------------------------------------------.....]..---..>>.--.]]]......
Ddi.mL2504 gcaccucgau--AAAC(21)A------GAUGUCGAGGU------------------------------------------------------------------------------------------UAAAUUUAGGUGAAUUGACAAGAACCUCUUUUUUAAG----------------------------AAUAA-------------------------UUUAAAAGACAACUUGCAGCGAAGCUUACUA--------------AUACACAUAAUAACUG------UAGUAAGAACGUUCAACGACUAGAUCUUGAGGUGUGUAACCAAUAAUAGAUCCAAGA-----GUACCAAGCAAUU------------(277)-------------AAUUGAAGACAUAGUCUGAACAGUUAU------GUGA---AUAACUGAA--GUAUAUUAUAAACA--AAUAUAC-------------------------------------------------GAUAACAA---AAAAG--gucggcuuaa
..<<<<<<<<--<...~~~~.------[[^>>>>>>>>------------------------------------------------------------------------------------------.....<<<<<<<...<<.<<<<......<<<<<<<<<----------------------------.....------------------------->>>>>>>>>...>>>>>><<<...<<<<<<<--------------................------>>>>>>>..>>>...[.[[[[[..<<<<<.<<<.<<<........>>>.>>>>>>>>-----.>>>>>>><<<<<------------~~~~~------------->>>>>......]]]]]][..<<<<<<<------....--->>>>>>>..--<<<<<<<.......-->>>>>>>-------------------------------------------------.....]..---.....--]]].......
Sob.mL2504-1 acaccucgau--UAUUUA-------CGAUAGUCC-----GCUUUUUUU-----------GUGA----------GAAAAAAGU----------------------------------------------UUGCAUUGGGUG-59UA-CAAGAAAAGCCAUACA-------------------------------(87)---------------------------UGUAUGGUUAACUUGCAGCGAAGCUUUUC-----------------UCGGUA(50)-----------GAAAAGAACGUUCAACGACUAGAAGGUGAGUAUUACC----AACAAUAAUCCUUC-CACGAGCGCCCAACUGCUUUUCC-------(797)--------GGAAAAGUAGAUGACAUAGUCUAAGCUACC--------(32)-----GGUAGAA--AAAAGAGAUAAACA--CUCUUUU-------------------------------------------------GAUAAUAU---AACUG--gucggcuca-
.......<<<--<<<<..-------[^^^>>>>.-----<<<<<<<<<-----------....---------->>>>>>>>>----------------------------------------------.....<<<<<<<-~~<.-<<<<...<<<<<<<<<-------------------------------~~~~--------------------------->>>>>>>>>..>>>>.><<<...<<<<<<-----------------......~~~~----------->>>>>>..>>>...[.[[[[[<<<<<....<<<<...----...>>>>..>>>>>-......>>>>>>><<<<<<<<<<-------~~~~~-------->>>>>>>>>>......]]]]]][<<<<<<<--------~~~~----->>>>>..--<<<<<<<.......-->>>>>>>-------------------------------------------------.....]..---..>>.--]]]].....-
Sob.mL2504-2 acaccucgau--UAUUUA-------CGAUAGUCC-----GCUUUUUUU-----------GUGA----------GAAAAAAGU----------------------------------------------UUGCAUUGGGUG-59UA-CAAGAAAAGCCAUACA-------------------------------(87)---------------------------UGUAUGGUUAACUUGCAGCGAAGCUUUUC-----------------UCGGUA(50)-----------GAAAAGAACGUUCAACGACUAGAAGGUGAGUAUUACC----AACAAUAAUCCUUC-CACGAGCGCCCAACUGCUUUUCC-------(798)--------GGAAAAGUAGAUGACAUAGUCUAAGCUACC--------(32)-----GGUAGAA--AAAAGAGAUAAACA--CUCUUUU-------------------------------------------------GAUAAUAU---AACUG--gucggcucau
.......<<<--<<<<..-------[^^^>>>>.-----<<<<<<<<<-----------....---------->>>>>>>>>----------------------------------------------.....<<<<<<<-~~<.-<<<<...<<<<<<<<<-------------------------------~~~~--------------------------->>>>>>>>>..>>>>.><<<...<<<<<<-----------------......~~~~----------->>>>>>..>>>...[.[[[[[<<<<<....<<<....----...>>>>..>>>>.-......>>>>>>><<<<<<<<<<-------~~~~~-------->>>>>>>>>>......]]]]]][<<<<<<<--------~~~~----->>>>>..--<<<<<<<.......-->>>>>>>-------------------------------------------------.....]..---..>>.--]]]]......
Pwi.mL2504 gcaccucgau--UAAUUUUAGCAGAAGAUAGUCGAGG-------------------------------------------------------------------------------------------CUAAAGUGGGUGAAUUG-CAAGGAUCUCUCUUUAAUUUAG------------------------AAUUUAA--------------------CUUGAUUAAGAGACAAUUUGCAGCGAACGAUUUCGAAUA-----------GAAUUUUUGCA------UAGUAGAAAUGAACGUUCAACGACUAGAGAAUGAGGAUAUCUU---ACCAAUAAUUUCUC-CACGAGCGCCCGCUAACUUGUA--------(221)---------UACAAGUUAAUGACAUAGUCUGAGCUACUUU------GUGA---AGAGUAGAA--AUUUAGGAUAAAGAG-CCUAAAU-------------------------------------------------GAUAACAU---AACUG--gucgacucau
...<<<<<<<--<<............[[^>>>>>>>>-------------------------------------------------------------------------------------------.....<<<<<<<...<<-<<<<....<<<<<<.<<<<.<<------------------------.......-------------------->>.>>>>>>>>>>...>>>>>><<<....<<<<<...<<-----------...........------>>...>>>>>...>>>...[.[[[[[<<<<<...<<.......---.>>......>>>>>-......>>>>>>><<<<<<<<<--------~~~~~--------->>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........->>>>>>>-------------------------------------------------.....]..---..>>.--]]].......
Rsp.mL2585 gaguuggguu--UAAA----------UAUGGACCCGUUA--AGAUCU------------UUAG-----------GGAUCU---------------------------------------------AUAAAUUACUGGGUGAAUUA-CAAAGACAAGUUA----------------------------------UUAUAU--------------------------------UAACUUUAUCUGUAACGAAAAUAAGCUU--------------UGA-----------AAGCAUUAUAACCGUUCAACGACUAAAUGGUGAUAAA------AAAAUACUCAUCCA--AUAUUAGUGCCCAGCAUUUAUU---------(827)----------AAUAAAUGAUGAUAUAGUCUGAGCAAAUUG------GUGA---CAAUUUGAA--AUAAAUAAAUCCAUU-GAUUUGUUUAU---------------------------------------------AUUAACAU----AAUG--cauagcgccg
.....<<<<<--<<..----------[[^^>>>>>....--<<<<<<------------....----------->>>>>>---------------------------------------------........<<<<<<<....<-.<<<.....<<<<----------------------------------......-------------------------------->>>>>>>.>.<<<.......<<<<<<<<--------------...----------->>>>.>>>>...>>>...[.[[[[[..<<<<<<....------.......>>>.>>>--.......>>>>>>><<<<<<<<---------~~~~~---------->>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>..--<<<<<<<<<<<....->>>>>>>>>>>---------------------------------------------.....]..----..>.--]]]]......
Sce.m.COB,5 agcaucuauu--GA(216)A------GUACAGUAG-----CAUUAAAU-----------(38)----------GUUUAAUG----------------------------------------------AUUAAAAUUGGUUAAUUGUCAAGAAAAUCUAAGGUAUUA-------------------------AUAAAUAAA---------------------UAAUACUAUGACAACUUGCAGCGAAGUUUAUAUC-----------------AUCUC(56)--------GAUAUAAAAACGUUCAACGACUAGAAAGUGAACUGAGAU----AGUAAUA-CCUUUC-CACGAAAACCAAUUAAUUUAUAA-------(147)--------UUAUAAAUUAAUGACAUAGUCUGAACAAUAAU------GAAA---AUUAUUGAG--AUAAGAUAUUAAAUA-AUCUUAU---------------------------------------------GUUAACAUAUAU--AAAUUG--uguaccugaa
.....<<<<<--<.~~~~~.------[[[^>>>>>-----<<<<<<<<-----------~~~~---------->>>>>>>>----------------------------------------------......<<<<<<<...<<.<<<<.........<<<<<<<-------------------------.........--------------------->>>>>>>.......>>>>>><<<...<<<<<<<<-----------------.....~~~~-------->>>>>>>>..>>>...[.[[[[[<<<<<<<.<<<.....---->>>..>>-.>>>>>-......>>>>>>><<<<<<<<<<-------~~~~~-------->>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<........->>>>>>>---------------------------------------------.........]..--...>>.--.]]]].....
Tru.m.A9,1 gcuacagguu--UAA--------GCGAAUAGAUCUGU----------------------------------------------------------------------------------------------UAUAGGGUUAAUUG-CAAGAAAUAUCU-----------------------------------UAA--------------------------------AGAUAAAUUUGCAGCGAAUAUUAGUAUAA--------------AUUAUA----------UUAUACUAAUAACGUUCAACGACUAAAAAUGAGUAGUGUA-----AACAAAA-AUUUU-----AUAAAUCCUACAUUU-------------AUA---------------AAUGAAGACAUAGUCUAAAACAACAAAAAAGUUAAAUGUUUUAUUAGAAAUAGUAAUAAAAUUAUUAAUUUUUU-----------------------------------------------AUUAAUUAA--UUUGCG--uauucgcauu
...<<<<<<<--<<.--------[[[[[^^>>>>>>>----------------------------------------------------------------------------------------------..<<<<<<<...<<-<<<<...<<<<<-----------------------------------...-------------------------------->>>>>..>>>>>><<<..<<<<<<<<<<<--------------......---------->>>>>>>>>>>.>>>...[.[[[[[<<<<<..........-----.......->>>>>-----...>>>>>>><<<<.-------------...--------------->>>>......]]]]]][<<......<<<<<<<<<<..<<<<<<<<<.......>>>>>>>>>..>>>>>>>>>>-----------------------------------------------......]..--.>>...--]]]]]]]...
Tpa.m.COX2,1 uggacgucuu--UACUUUA------UGGUUGAGACGU----------------------------------------------------------------------------------------------AAUGAAGUUAAAUG-CAUGAACACCUAA----------------------------------CAA-------------------------------UUAGGAAAUAUGCAGUGGAUGAAUU---------------------UAUA--------------GAUUUAUCUACUCAACGACUAAGGUAUAUU------------------AUACCU--UUAAAAAACUUCACGA---------------AUUA---------------UCGAAGACAUAGUCUGACCCUAUGU------GAAA---AUAUAGGAA--GCU-------UAAUAC----GGC-------------------------------------------------GAUAACAU----AUAA--gaaccaaaca
...<<<<<<<--.......------[[[[[>>>>>>>----------------------------------------------------------------------------------------------..<<<<<<<...<<-<<<<....<<<<<----------------------------------...------------------------------->>>>>...>>>>>><<<<<<<<<<<---------------------....-------------->>>>>>>>>>>...[.[[[[[<<<<<<...------------------>>>>>>--......>>>>>>><<<---------------....--------------->>>......]]]]]][<.<<<<<<<------....--->>>>>>>..--<<<-------......---->>>-------------------------------------------------.....]..----.>..--.]]]]]....
Tpa.m.ND1,1 cgacuacggu--ACUU----------UUGUGCC-------CUGC---------------UUUA--------------GCAG-------------------------------------------------UAACCGGGUUAAUUU-UGAGAACAUCU------------------------------------AAUA--------------------------------AGACAAUUCAAAGCCUAUAUA-----------------------UAAC----------------UGUAUAAGUUGAACGACUAUUAAU------------------AAUAAUUAA---CUAGAAAACCUGGCUCC-------------UACUU--------------GGAGAUGAAAUAGUCUAAACAUUAGU------GUGA---ACUAAUGAA--ACC------AAUAAAA----GGU-------------------------------------------------GAUAAUAU--GUAUUG--acgaucaguu
.......<<<--<<..----------[[^^>>>-------<<<<---------------....-------------->>>>-------------------------------------------------...<<<<<<<...<<-<<<<....<<<------------------------------------....-------------------------------->>>...>>>>>><<<<<<<<<-----------------------....---------------->>>>>>>>>...[.[[[[[<<<<<------------------....>>>>>---......>>>>>>><<<<-------------.....-------------->>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<------.......---->>>-------------------------------------------------.....]..--...>>.--]]]]......
Ama.m.COX2,1 aaucacggau--UAACCAA--------AUAGUCC-----CUCAAGA-------------(38)----------UCUUGUAGAA--GGAGUCUUUAAGAUUCCCAGACCAUAACAGGUCUG-----------AAUCGGGUGAAUUGUCAAGAAGGCUAAGGGAG-----------------------------UAUUGU-------------------------CUCCUAUGUUAACUUGCAGCGAAGCUUAUAUC---------------AGUGCUC(45)--------GAUAUAAGAACGUUCAACGACUAAUCGGUGAGUAGCACU----AACAAUAAACCGGA-CACGAGUGCCCGACAACUUAUUAC-----AUAUUUA------GUUUUAAGUUGAUGACAUAGUCUGAGCAACUAG------GAAA---CUAGUUGAA--GUAAAGG-AUAAAGAGCUUUUAC-------------------------------------------------GCUAACAU---AACUG--uuaugccuau
......<<<<--<<.....--------[^^>>>>-----<<<<<<<-------------~~~~---------->>>>>.>>..--<<<<<<<...>>>>>>><<<<<<......>>>>>>-----------..<<<<<<<...<<.<<<<..<<<...<<<<<-----------------------------......------------------------->>>>>..>>>..>>>>>><<<...<<<<<<<<---------------.......~~~~-------->>>>>>>>..>>>...[.[[[[[.<<<<<..........----........>>>>>.-......>>>>>>><<<<<<<..<<-----.......------>>..>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<<-........>>>>>>>-------------------------------------------------.....]..---..>>.--].]]......
Ama.m.COB,4 uuaguugaau--UUGUUU-------AACAAGUUC-----CGGAGAAUA-----------GUAA--------UAUUCUCAUG------------------------------------------------AAAAUCGGGUGAAUUGUCAAGGAGACCUCC---------------------------------UACAAU-----------------------------GGAGAUGACUUGCAGCGAAGCUUAUAUCAGU-------------GCUUA----------AUAGAUAUAAGAACGUUCAACGACUAAUCGGUGAGUAGCACU----AACAAUAAACCGG(38)CGAGCGCCCGACAACCAU-----------AAUU-----------AUGGUUGAUGACAUAGUCUGAACAGGCAGGU----GACU---GUCUGAAGAGAAAUUUA----AACGA--UUUCUCGA-------------------------------------------------UAACAUA---AUUG--uuguuugggg
......<<<<--<<<<..-------[^^^^>>>>-----<<<<<<<<<-----------....-------->>>>>>>.>>------------------------------------------------....<<<<<<<...<<.<<<<.....<<<<---------------------------------......----------------------------->>>>....>>>>>><<<...<<<<<<<<.<<-------------.....---------->>.>>>>>>>>..>>>...[.[[[[[.<<<<<..........----........>>>>>~~~~....>>>>>>><<<<<<<-----------....----------->>>>>>>......]]]]]][<<..<<<<<<<----....--->>>>>>>..<<<<<<<<----.....-->>>>>>>>-------------------------------------------------...]...---.>>.--]]]]].....
Ceu.c.psbC,2 uccaacgggu--AGAAA--------UCAGUGCCCUUU---UAGUCU-------------GUAA------------AGACUA---------------------------------------------UCAAUAACUGGGUGAAUUGUCAAGAACGCUAAAGGUUAUAUAAAAACUCA---------------CCAGAAU------------------UGAGCUUAACCCACGCCAACUUGCUGCGAAGCUUGCCGAA--------------AGAUUAGUUUU----UUUGUAGGCAAGAACGUUCAACGACUAGAGAGUGAGGAUAAUCU---GCCAAUAAUCUCUC-CACGAGCGCCCAGCACUUUUAGU--------(44)-------ACUAAGAGUUGAUGACAUAGUCUGAACCCUAGG------GAAA---CCUAUGGGAAAGUUAAAGAUUAAAUG-CUUUAACGAAAAAAACUU(141)UUGUUUUUUUC-----------------------UUAACAA----AUUG--ccugaagccu
......<<<<--<....--------[[[[>>>>>...---<<<<<<-------------....------------>>>>>>---------------------------------------------.......<<<<<<<...<<.<<<<...<<....<<<<<........<<<<---------------.......------------------>>>>..>>>>>...>>...>>>>>><<<..<<<<<<.<<<--------------...........---->>>>>>>>>.....>>>...[.[[[[[<<<<<...<<.......---.>>......>>>>>-......>>>>>>>.<<<<<<<<<--------~~~~------->>>>>>>>>........]]]]]][<<<<<<<<<------....--->>>>.>>>...<<<<<<<........->>>>>>><<<<<<<<<..~~~~~..>>>>>>>>>-----------------------....]..----.>>.--.]]]].....
Ncr.m.COB,2-1 auuguugagu--CA(962)-----AAUGGGGCUCC-----UUAAAAUAGGUAGGG--UUUAA---UCUUAUUAUAUUUUAG---------------------------------------------AGGCAAUUGGGGAAAAUUA-CAAGGACAUUUAAUAAA---------------------------UUACCUCCGU-----------------------UUUAUUAGAUUAUUUGUAGCGAAACUUAAUUCG------------GUAUAUAAAAAA--------UGGAUUAAGAACGUUCAACGACUAAUGAGUGAGUUAUACC----AACAAUAAGCUCAA-CACGAUACCCCCAAAAUCCACUC--------UAU---------GAGUGGGUUUAAGAUAUAGUCUAAAUAUACCC------UUAA---GGGUGUAAA--GUAUAA-GUUAAAUA--UUAUAC--------------------------------------------------GUAAUAU----AUUG--ugcauuuagg
......<<<<--<.~~~~~-----[[[[.^>>>>.-----<<<<<<<<.<<<<<<--.....--->>>>>>..>>>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<...<<<<<<<<<<---------------------------..........----------------------->>>>>>>>>>..>>>>>><<<...<<<<<<<<<------------............-------->>>>>>>>>..>>>...[.[[[[[.<<<<<..<<<.....----...>>>..>>>>>.-......>>>>>>><<<<<<<<<<--------...--------->>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<-........-->>>>>>--------------------------------------------------....]..----.>>.--].]]]]....
Ncr.m.COB,2-2 auuguugagu--CA(980)-----AAUGGGGCUCC-----UUAAAAUAGGUAGGG--UUUAA---UCUUAUUAUAUUUUAG---------------------------------------------AGGCAAAUGGGGAAAAUUA-CAAGGACAUUUAAUAAA---------------------------UUACCUCCGU-----------------------UUUAUUAGAUUAUUUGUAGCGAAACUUAAUUCG------------GUAUAUAAAAAA--------UGGAUUAAGAACGUUCAACGACUAAUGAGUGAGUUAUACC----AACAAUAAGCUCAA-CACGAUACCCCCAAAAUCCACUC--------UAU---------GAGUGGGUUUAAGAUAUAGUCUAAAUAUACCC------UUAA---GGGUGUAAA--GUAUAA-GUUAAAUA--UUAUAC--------------------------------------------------GUAAUAU----AUUG--ucauuugagg
......<<<<--<.~~~~~-----[[[.[^>>>>.-----<<<<<<<<.<<<<<<--.....--->>>>>>..>>>>>>>>---------------------------------------------.......<<<<<<<...<<-<<<<...<<<<<<<<<<---------------------------..........----------------------->>>>>>>>>>..>>>>>><<<...<<<<<<<<<------------............-------->>>>>>>>>..>>>...[.[[[[[.<<<<<..<<<.....----...>>>..>>>>>.-......>>>>>>><<<<<<<<<<--------...--------->>>>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>..--<<<<<<-........-->>>>>>--------------------------------------------------....]..----.>>.--]]]]].....
Cmo.c.psbA,1 agcagcucau--AAAAA---------AACUGUGACUU----GUACUC------------GUGA-----------GAGUAC---------------------------------------------UCGAAUAACCGGGUGAAUUG-CGGGAAACCUAAAUUAUUUC--------------------------(1363)----------------------GGAAUAAUAUGGCAAUCCGCAGCCAAGCUACAG------------------AUGGG(554)------------GUAGAAGGUUCAGAGACUAAUGGUUGAGUCCC-------AACAAUAAUACCAU--ACUAGCGCCCGGCACCUCA-----------(34)-----------UGAGGUGAUGAUAUAGUCCAAACCACUUU------GAAA---AAAGUGGACAACGUCCAAUUUGUUAA(158)UUAACAAAU--------------------------------------------CAAAUAA----AAAG--gguuauuucg
...<<.<<<<--<....---------[[[^>>>>>>.----<<<<<<------------....----------->>>>>>---------------------------------------------........<<<<<<<...<<-<<<<...<<...<<<<<<<<--------------------------~~~~~~---------------------->>>>>>>>..>>...>>>>>><<<...<<<<<<------------------.....~~~~~------------>>>>>>>>>...[.[[[[[<<<<<........-------.........>>>>>--.....>>>>>>><<<<<<<-----------~~~~----------->>>>>>>......]]]]]][..<<<<<<<------....--->>>>>>>..........<<<<<<<<<~~~~~>>>>>>>>>--------------------------------------------....]..----....--]]]]......
Cmo.m.psaB,1 uugggugggu--UAGA--------AAAGUGGCCCUU------AACUUGU----------GUGA---------ACAAGUU-----------------------(255)--------------------------CUGGGUGAAAUGACGGGAACCCUAAAUUGAUUAUU-------------------------(56)---------------------AGUAAUCAAUAUGGCAAUCCGCAGCGAAGCCAAGGAUG---------------GGCUUUAG---------UGUCCUUGGAACGUUCAGAGACUAAAGCUUGAGUCCC-------AACAAUACUAGCUU--AUUAGCGCCCAGUACCUCCAU--------UUUUU----------AUGAGGUAAUGAUAUAGUCCAAACUUAGUA------GAAA---UACUAAGA---GUAAUAAU--(87)-AUUAUUAC----------------------------------------------------------AAAAAUG--uacuuucua-
......<<<<--<<..--------[[[[^^>>>>..------<<<<<<<----------....--------->>>>>>>-----------------------~~~~~--------------------------<<<<<<<...<<.<<<<....<<<.<<<<<<<<<<-------------------------~~~~--------------------->>>>>>>>>>.>>>...>>>>>><<<...<<<<<<<<<---------------........--------->>>>>>>>>..>>>...[.[[[[[<<<<<..<<<...-------......>>>>>>>>--.....>>>>>>><<<<<<.<<--------.....---------->>>>>>>>......]]]]]].<.<<<<<<<------....--->>>>>>>.---<<<<<<<<--~~~~->>>>>>>>----------------------------------------------------------.....>.--]]]]]]...-
Cre.c.psbA,1 -uucgcaaau--ACCAUA---------GGUGUCCU------GUACUC------------GUAA-----------GAGUAC----------------------------------------------UGAAAAAUUGGGUGAAUUG-CUGGAACC--------------------------------------CGAAA---------------------------------GGUAAUCAGCAGCCAAGCUACAGGUGGGCUAUAUAA------AUAU----UUAUAUAGGUUCUGUAGAAGGUUCAGAGACUAGUGCUUGAGUCCC-------AACAAUAAUAGCAC--AUUAGCGCCCAACCCCUUUUA-------UUUGAGU-------UAAAAGGGUGAAGAUAUAGUCCAAC------------(1009)------------------------------------------------------------------------------------AUUAACAAGGAAUCGUG--gaugguaucc
-.......<<--<<<...---------^>^>>...------<<<<<<------------....----------->>>>>>----------------------------------------------.......<<<<<<<...<<-<<<<.<<<--------------------------------------.....--------------------------------->>>..>>>>>><<<...<<<<<<<....<<<<<<<<------....---->>>>>>>>..>>>>>>>..>>>...[.[[[[[<<<<<........-------.........>>>>>--.....>>>>>>>.<<<<<<<<-------.......------->>>>>>>>........]]]]]].<<------------~~~~~~------------------------------------------------------------------------------------..............>>.--].].......
Cre.c.psbA,4 agcagcucau--AAGUAA--------AACUGUGACUU----AUACUC------------GUGA-----------GAGUAU---------------------------------------------UCGAAUAACUGGGUGAAUUGUCAGGAACCCUACAUUAUUACAA------------------------(1533)--------------------UUGUAAUAAUAUGGCAACCUGCAGCGAAGCUAGGGAUGGGC-------------AUU------------GCUUCCCUAGAACGUUCAGAGACUAGAGCUUGAGUCCC-------AACAAUAAUAGCUC--ACUAGCGCCCGGCAUCUAAAAU------GGUUUAA-------AUUUUAGAUGGUGAUAUAGUCCAACCCACCUU------GAAA---AAGGUGGACGACGACCAGUAGAUUAAAAAGGUUUUUAGUCUAU--------------------------------------------AUUA---AAUUG--guuacuuugg
...<<.<<<<--<.....--------[[[>>>>>>>.----<<<<<<------------....----------->>>>>>---------------------------------------------........<<<<<<<...<<.<<<<....<<<.<<<<<<<<<<------------------------~~~~~~-------------------->>>>>>>>>>.>>>...>>>>>><<<...<<<<<<<..<<<-------------...------------>>>>>>>>>>..>>>...[.[[[[[<<<<<........-------.........>>>>>--.....>>>>>>><<<<<<<<<<------.......------->>>>>>>>>>......]]]]]][<.<<<<<<<------....--->>>>>>>..........<<<<<<<<<<<....>>>>>>>>>>>--------------------------------------------.]..---...>.--]]].......
Pan.m.COX2,2 uuuaauggau--AAAAGUCUU---ACUUAAGUCCAU----CGUACAA----------UCUAAUCC---------UUGUAUG----------------------------------------------AUUAAAGAGGAUGAAUUU-CAAGAAGAGCUUGC--------------------------------CAAAU-----------------------------GCAAGGUUACUUGAAGCGAAGCUUGUU---AAGUAGAUUUUCAGUUUAUACUGAUUAAAAUA---AACAAGAAUGUUCAACGACUAGAAGAUGAAAUCUAUCU---ACAGAAUAGUCUUC(50)UAGUUUCCUCCGUCAAUU---------(27)-----------AAUUGAUGAUGACAUAGUCUGAACCAUAUU------GAAA---AAUAUGGA---GUAAAAGAUAAAGAUUAUCUUUA-------------------------------------------(1628)CAUAACAU---AAUUG--gaaguuagug
....<<<<<<--..<<<<...---^^^^..>>>>>>----<<<<<<<----------........--------->>>>>>>----------------------------------------------......<<<<<.<...<<-<<<<.....<<<<<--------------------------------.....----------------------------->>>>>....>>>>>><<<...<<<<<<---................................--->>>>>>..>>>...[.[[[[[<<<<<.....<<<....---..>>>....>>>>>~~~~...>.>>>>><<<<<<<<---------~~~~----------->>>>>>>>......]]]]]][<<<<<<<<<------....--->>>>>>>.---.<<<<<<..........>>>>>>-------------------------------------------~~~~~~.....]..---..>>.--.]]]].....
Pan.m.ND1,3 uuagcuggau--UUUAUCCUUUAAAAAAAAGUUCU----UCAUUUGU------------AGAA-----------ACAAAUGA--------------------------------------------UAAAAAUCCGAUUGAAUUU-CAAGAAAAGCUUA----------------------------------UAA-------------------------------UAAGUCAACUUGAAGCGAAACAUAUUUU--------CUUUAUAAAAACAUUAAUUUU-----AAGGUAUGGACGUUCAACGACUAGUAUAUUAUUAA-AAAU---AUUAAUAGUUCUAC-CAAGAGCAGUCGGGGUUUUAAAUGG----(1970)------UUAUUUAAGACUAAGACAUAGUCUGAACCAGUUC------GAAA---GAACUAGA--UGUAAAACAUAAAUAGU--UUUAC-------------------------------------------------GAUAACAA--CAUUUG--gaagugcuaa
......<<<<--<<<............>>>>>>>.----<<<<<<<<------------....----------->>>>>>>>--------------------------------------------.......<<<<<<<...<<-<<<<....<<<<<----------------------------------...------------------------------->>>>>...>>>>>><<<...<<<<<<<<--------.....................----->>>>>>>>..>>>...[.[[[[[<<<.<<<<<<<<-....---.>>>>>>>>..>>>-......>>>>>>><<<<<<<<<<<<----~~~~~~------>>>>>>>>>>>>......]]]]]][<<<.<<<<<------....--->>>>>.>.--.<<<<<...........-->>>>>-------------------------------------------------.....]..--...>>.--..........
Pan.mL2449 cgcuagggau--GU--------------UUGUCCUU-----CAAUAU-----------(127)-----------AUAAUUG--------------------------------------------AUAAUAUAUUGGGUUAAUUU-CAAAAAUUACUUUU-----------AAGGCUGGGGUGAUAUAUAGCUGUAUACAGCUCGCUCUAGAAA------------AAAAGUAAAUUUGAAGCGAAAUUUAUCU--CAGCAUUAUAAAGCAGCUAGCUGCUUACAUAA--AGAUAAAAUCGUUCAACGACUAUAAGGUGAGUAAUGCU----AACAAUAAUCCUUU--AUUAAUACCCAACUUUCUUUUUUUUUUU(1960)AAAAAAAAAUAAGAAAUGAAGAAAUAGUCUGAACCCUUUU------GUAA---AAAAUGGA--AAU------AAAUUAAA-----AU-------------------------------------------------GAUAACAA----GUUG--aacaggcuaa
....<<<<<<--..--------------[[>>>>>>-----<<<<<<-----------~~~~~----------->>.>>>>--------------------------------------------........<<<<<<....<<-<<<<..<<<<<<<<-----------...........................................------------>>>>>>>>.>>>>>><<<<..<<<<<<<--................................-->>>>>>>.>>>>...[.[[[[[.<<<<...<<......----.>>......>>>>.--......>>>>>><<<<<<<<<<<<<<<<~~~~~~>>>>>>>>>.>>>>>>.>......]]]]]][<<<<.<<<<------....--->>>>.>>.--.<<------........----->>-------------------------------------------------.....]..----.>>.--]]........
P1 P10 P1' P2 P2' P2.1 P2.1' P3 P4 P5 P5a P5a' P5' P4' P6 P6a P6a' P6' P7 P7.1 P7.1a P7.1a' P7.1' P3' P8 P8' P7' P9.0 P9 P9' P9.1 P9.1' P9.2 P9.2' P9.0' P10'